# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.11e-16 1m65A 245 9.44e-12 c.6.3.1 84847 2anuA 255 5.98e-10 c.6.3.1 127058 2hnhA 910 9.69e-07 1v77A 212 3.44e-06 c.6.3.2 108402 1j6oA 268 1.064 c.1.9.12 77088 2qahA 303 1.386 2gzxA 265 1.920 2ob3A 330 2.193 1ybqB 390 2.433 1i60A 278 2.883 c.1.15.4 71118 2ffiA 288 3.342 c.1.9.15 133385 1gkpA 458 3.592 b.92.1.3,c.1.9.6 70231,70232 1vflA 356 3.743 c.1.9.1 120041 1qtwA 285 3.748 c.1.15.1 29392 1zzmA 259 3.875 c.1.9.12 125911 1yw1A 442 4.357 c.1.16.4 124130 1zgdA 312 4.452 2gokA 429 4.829 2vc7A 314 5.236 1xwyA 264 5.762 c.1.9.12 122411 1vbjA 281 6.001 1hw6A 278 6.143 c.1.7.1 61296 1tvlA 454 7.105 c.1.16.4 107366 1gkrA 458 7.243 b.92.1.3,c.1.9.6 70251,70252 2qt3A 403 7.374 2fb2A 340 7.627 2q02A 272 7.907 2qw5A 335 8.401 3cnyA 301 8.774 2z00A 426 9.386 2b81A 323 9.567 1q7zA 566 9.689 c.1.21.2,c.1.26.1 96090,96091 1yixA 265 9.713 c.1.9.12 123371 2i57A 438 9.96 2icsA 379 10.12 b.92.1.8,c.1.9.14 137241,137242 1frb 315 10.20 1us0A 316 10.21 c.1.7.1 99850 3bofA 566 10.42 1f07A 321 10.49 c.1.16.3 59560 2opjA 327 10.49 1f6yA 262 10.56 c.1.21.2 29673 2pajA 492 11.38 3brqA 296 11.92 1tv8A 340 12.53 c.1.28.3 107352 1o12A 376 12.75 b.92.1.5,c.1.9.10 80758,80759 7odcA 424 12.81 b.49.2.3,c.1.6.1 26488,28650 2hk0A 309 13.57 2g3fA 421 15.12 1k77A 260 15.20 c.1.15.5 72096 2q09A 416 15.33 1zuaX 317 15.34 2g0wA 296 16.71 c.1.15.4 134503 1a0cA 438 17.22 c.1.15.3 29529 1bf6A 291 18.52 c.1.9.3 29065 3ciwA 348 18.54 1a0dA 440 19.61 c.1.15.3 29533 1mi3A 322 19.72 c.1.7.1 91274 1o0yA 260 20.33 c.1.10.1 80756 1j96A 323 21.38 c.1.7.1 71616 1i0dA 332 21.63 c.1.9.3 61487 1s1pA 331 21.99 c.1.7.1 98350 1qwkA 317 22.82 c.1.7.1 96482 2i7gA 376 25.23 2nqlA 388 26.67 2pgfA 371 26.98 3ce9A 354 28.03 1gqnA 252 28.92 c.1.10.1 90514 1oj7A 408 29.58 e.22.1.2 103971 1ezwA 349 30.92 c.1.16.3 29558 2cftA 298 31.80 2bgsA 344 32.97 1zp4A 304 33.18 1wx0A 223 33.57 c.1.10.1 121382 3c86A 328 33.76 2pceA 386 33.83 2ogyA 262 33.91 3b9oA 440 34.47 2qv5A 261 34.83 1rvkA 382 34.87 c.1.11.2,d.54.1.1 97928,97929 1o2dA 371 36.04 e.22.1.2 86591 1muwA 386 36.20 c.1.15.3 79495 1yacA 208 37.74 c.33.1.3 31757 2hejA 323 39.30 1bg4A 302 39.38 c.1.8.3 28806 1v93A 296 40.78 c.1.23.1 100532 2depA 356 41.22 1qgoA 264 41.53 c.92.1.2 35596 2e7fA 262 42.11 1rhcA 330 42.38 c.1.16.3 97468 1n7kA 234 42.91 c.1.10.1 85374 1xfcA 384 43.56 1twiA 434 44.11 b.49.2.3,c.1.6.1 107399,107400 1rrmA 386 45.19 e.22.1.2 105081 2qulA 290 45.45 1ur4A 399 45.46 c.1.8.3 113402 2cygA 312 46.46 c.1.8.3 131025 2bw0A 329 46.57 b.46.1.1,c.65.1.1 129303,129304 1tjyA 316 46.60 c.93.1.1 107062 1xrtA 467 47.11 b.92.1.3,c.1.9.6 122258,122259 1zjjA 263 48.07 1geqA 248 48.28 c.1.2.4 28589 2yw3A 207 48.51 1k0fA 277 49.17 c.92.2.2 71974 2nlyA 245 50.03 c.6.2.7 138364 1vhcA 224 50.14 c.1.10.1 100661 1nqkA 381 50.81 c.1.16.4 92050 1n82A 331 50.97 c.1.8.3 91703 1yx1A 264 51.61 c.1.15.7 124169 1toaA 313 52.34 c.92.2.2 35598 2hbjA 410 52.65 a.60.8.4,c.55.3.5 136311,136312 1gveA 327 53.22 c.1.7.1 70597 2pljA 419 53.86 1vbuA 328 54.39 c.1.8.3 119963 1kfcA 268 56.45 c.1.2.4 77371 1v0lA 313 56.58 c.1.8.3 108207 1vcvA 226 57.06 c.1.10.1 119988 2p3eA 420 58.37 3c8nA 356 58.73 2fn9A 290 60.57 1aq0A 306 61.36 c.1.8.3 28842 1yc5A 246 61.72 c.31.1.5 122910 1w8sA 263 61.85 c.1.10.1 120744 1g5bA 221 63.29 d.159.1.3 60261 2qdeA 397 64.65 1vljA 407 65.21 e.22.1.2 108832 2ps2A 371 65.80 1k92A 455 66.14 c.26.2.1,d.210.1.1 68325,68326 1ur3M 319 66.88 c.1.7.1 99806 2egzA 219 68.14 3be7A 408 69.58 2dri 271 71.63 1ynpA 317 71.75 1fg7A 356 74.20 c.67.1.1 59819 2fcaA 213 74.30 c.66.1.53 133262 2v8pA 271 75.08 2pg3A 232 77.60 3ct2A 382 78.05 1mxsA 225 79.07 c.1.10.1 91494 2puzA 419 79.63 2ao0A 324 79.83 2pthA 193 80.36 c.56.3.1 33793 2qghA 425 81.08 1rk6A 496 81.78 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1rmwA 212 82.42 1gudA 288 82.87 c.93.1.1 83326 2f96A 224 83.38 c.55.3.5 133153 3canA 182 84.74 1xm7A 195 87.11 d.159.1.8 115473 2driA 271 88.42 c.93.1.1 35637 2pn1A 331 89.19 2amxA 376 89.25 c.1.9.1 127024