# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.04e-15 1m65A 245 2.80e-11 c.6.3.1 84847 2anuA 255 1.64e-09 c.6.3.1 127058 1v77A 212 7.41e-06 c.6.3.2 108402 2hnhA 910 8.58e-06 1j6oA 268 0.9512 c.1.9.12 77088 1xwyA 264 1.048 c.1.9.12 122411 2ffiA 288 1.058 c.1.9.15 133385 2qt3A 403 1.683 2b81A 323 2.015 2gokA 429 2.017 2gzxA 265 2.021 3bofA 566 2.052 2pajA 492 2.290 1q7zA 566 2.801 c.1.21.2,c.1.26.1 96090,96091 1muwA 386 3.580 c.1.15.3 79495 1ybqB 390 4.268 1f07A 321 5.007 c.1.16.3 59560 1zzmA 259 5.301 c.1.9.12 125911 1vflA 356 5.615 c.1.9.1 120041 1gkrA 458 6.161 b.92.1.3,c.1.9.6 70251,70252 1yixA 265 6.210 c.1.9.12 123371 1gkpA 458 6.271 b.92.1.3,c.1.9.6 70231,70232 2vc7A 314 6.349 3be7A 408 7.274 1ezwA 349 7.507 c.1.16.3 29558 1hw6A 278 7.793 c.1.7.1 61296 1tv8A 340 7.832 c.1.28.3 107352 7odcA 424 8.510 b.49.2.3,c.1.6.1 26488,28650 1k77A 260 10.72 c.1.15.5 72096 1bf6A 291 12.03 c.1.9.3 29065 1i60A 278 12.49 c.1.15.4 71118 2i57A 438 13.97 2qahA 303 14.01 1rhcA 330 15.04 c.1.16.3 97468 1rk6A 496 15.27 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1us0A 316 16.67 c.1.7.1 99850 2g3fA 421 17.35 3brqA 296 17.40 1o0yA 260 17.92 c.1.10.1 80756 1frb 315 19.12 1zp4A 304 19.18 2puzA 419 20.67 2g0wA 296 21.81 c.1.15.4 134503 1v93A 296 22.19 c.1.23.1 100532 1vbjA 281 22.38 1vbuA 328 22.43 c.1.8.3 119963 2q02A 272 23.13 1i0dA 332 23.41 c.1.9.3 61487 1zuaX 317 24.13 1oj7A 408 25.39 e.22.1.2 103971 2icsA 379 26.52 b.92.1.8,c.1.9.14 137241,137242 1a0dA 440 28.35 c.1.15.3 29533 1s1pA 331 28.93 c.1.7.1 98350 2q09A 416 29.43 1rrmA 386 29.94 e.22.1.2 105081 1j96A 323 30.25 c.1.7.1 71616 2cygA 312 31.25 c.1.8.3 131025 2qw5A 335 31.43 1gqnA 252 32.23 c.1.10.1 90514 3c8nA 356 32.45 2pgfA 371 32.81 1yx1A 264 33.54 c.1.15.7 124169 3b9oA 440 33.71 1vcvA 226 33.87 c.1.10.1 119988 1vljA 407 34.10 e.22.1.2 108832 1wx0A 223 35.84 c.1.10.1 121382 2ogyA 262 35.98 3cnyA 301 36.00 2z00A 426 36.94 2qulA 290 37.04 1n7kA 234 37.09 c.1.10.1 85374 2phzA 311 37.72 1f6yA 262 37.79 c.1.21.2 29673 1v0lA 313 38.04 c.1.8.3 108207 3ce9A 354 38.43 2nlyA 245 38.82 c.6.2.7 138364 3c86A 328 38.98 2pljA 419 39.19 3ciwA 348 39.32 2pgnA 589 40.13 1xfcA 384 41.30 2hfsA 332 42.58 1ur3M 319 43.31 c.1.7.1 99806 2ashA 381 43.39 1yrrA 382 43.91 b.92.1.5,c.1.9.10 123935,123936 2cb1A 412 43.98 2qv5A 261 44.52 1aq0A 306 44.74 c.1.8.3 28842 1w8sA 263 45.00 c.1.10.1 120744 1lqaA 346 45.50 c.1.7.1 84674 1qw9A 502 45.66 b.71.1.2,c.1.8.3 96466,96467 2cftA 298 45.88 1fobA 334 46.07 c.1.8.3 83255 2ojpA 292 46.11 1zjjA 263 46.31 2hk0A 309 46.74 2z1aA 552 46.94 2e7fA 262 48.11 2f96A 224 48.12 c.55.3.5 133153 1qgoA 264 48.96 c.92.1.2 35596 1geqA 248 49.19 c.1.2.4 28589 1lucB 324 50.48 c.1.16.1 29548 7aatA 401 50.83 c.67.1.1 34250 1yacA 208 52.14 c.33.1.3 31757 1ra0A 430 52.83 b.92.1.2,c.1.9.5 111756,111757 1g5bA 221 55.36 d.159.1.3 60261 1ynpA 317 56.59 2bgsA 344 56.84 2debA 653 57.16 1fxxA 482 59.03 c.55.3.5 33726 1gveA 327 59.69 c.1.7.1 70597 1nrwA 288 60.13 c.108.1.10 86128 1dqsA 393 60.51 e.22.1.1 43347 1vhcA 224 61.61 c.1.10.1 100661 2fn9A 290 64.34 2amxA 376 64.61 c.1.9.1 127024 2yw3A 207 64.95 2o7cA 398 65.05 1gudA 288 65.07 c.93.1.1 83326 1o2dA 371 65.76 e.22.1.2 86591 2egzA 219 66.84 1x9iA 302 68.66 c.80.1.1 114997 1g5aA 628 69.14 b.71.1.1,c.1.8.1 65152,65153 2hbvA 334 69.31 c.1.9.15 136320 2hejA 323 69.63 2hqbA 296 71.20 1cl1A 395 72.01 c.67.1.3 34395 2p3eA 420 72.87 2bw0A 329 73.19 b.46.1.1,c.65.1.1 129303,129304 1pz1A 333 73.69 c.1.7.1 95390 1w9pA 433 74.45 c.1.8.5,d.26.3.1 114412,114413 1f0yA 302 74.91 a.100.1.3,c.2.1.6 18793,30197 2opjA 327 76.78 3d02A 303 77.00 3canA 182 77.59 2ao0A 324 77.87 2gruA 368 78.73 2pg3A 232 81.02 2ozlB 341 82.09 c.36.1.7,c.48.1.2 139447,139448 1yc5A 246 82.34 c.31.1.5 122910 1ozhA 566 82.80 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2hx1A 284 82.96 1kfcA 268 83.04 c.1.2.4 77371 1mxsA 225 85.08 c.1.10.1 91494 2r8wA 332 86.74 1tjyA 316 87.59 c.93.1.1 107062 2pthA 193 87.81 c.56.3.1 33793 1zgdA 312 88.45 2zodA 345 89.52