# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.47e-15 1m65A 245 2.11e-11 c.6.3.1 84847 2anuA 255 1.18e-09 c.6.3.1 127058 2hnhA 910 1.57e-06 1v77A 212 4.99e-06 c.6.3.2 108402 1j6oA 268 0.8256 c.1.9.12 77088 2ob3A 330 1.303 2qahA 303 1.342 2gzxA 265 2.224 2ffiA 288 2.332 c.1.9.15 133385 1i60A 278 2.656 c.1.15.4 71118 1qtwA 285 3.119 c.1.15.1 29392 1zzmA 259 3.271 c.1.9.12 125911 1xwyA 264 3.691 c.1.9.12 122411 1ybqB 390 4.077 1yw1A 442 4.368 c.1.16.4 124130 2vc7A 314 4.428 1gkpA 458 4.623 b.92.1.3,c.1.9.6 70231,70232 1vflA 356 4.679 c.1.9.1 120041 1zgdA 312 4.726 1hw6A 278 5.374 c.1.7.1 61296 2gokA 429 5.794 2fb2A 340 6.083 1vbjA 281 6.928 2qt3A 403 7.772 1gkrA 458 7.890 b.92.1.3,c.1.9.6 70251,70252 2b81A 323 8.154 2z00A 426 8.659 2i57A 438 8.715 2q02A 272 8.765 2opjA 327 9.382 1us0A 316 9.899 c.1.7.1 99850 1f6yA 262 9.909 c.1.21.2 29673 3bofA 566 10.02 2qw5A 335 10.12 1f07A 321 10.39 c.1.16.3 59560 3brqA 296 11.05 1k77A 260 11.63 c.1.15.5 72096 3cnyA 301 11.93 1tv8A 340 12.00 c.1.28.3 107352 1q7zA 566 12.39 c.1.21.2,c.1.26.1 96090,96091 1tvlA 454 12.65 c.1.16.4 107366 2g0wA 296 12.78 c.1.15.4 134503 1frb 315 12.84 1yixA 265 13.53 c.1.9.12 123371 1o0yA 260 14.11 c.1.10.1 80756 1qwkA 317 14.19 c.1.7.1 96482 2pajA 492 14.58 1a0cA 438 15.71 c.1.15.3 29529 2icsA 379 15.92 b.92.1.8,c.1.9.14 137241,137242 1i0dA 332 16.38 c.1.9.3 61487 7odcA 424 16.82 b.49.2.3,c.1.6.1 26488,28650 1j96A 323 17.41 c.1.7.1 71616 1mi3A 322 17.81 c.1.7.1 91274 2g3fA 421 18.05 1s1pA 331 18.16 c.1.7.1 98350 3ciwA 348 18.28 1o12A 376 19.99 b.92.1.5,c.1.9.10 80758,80759 3c86A 328 20.00 1zuaX 317 20.01 1a0dA 440 20.62 c.1.15.3 29533 2hk0A 309 20.90 2i7gA 376 21.40 2nqlA 388 23.04 3ce9A 354 25.08 2cygA 312 26.80 c.1.8.3 131025 1n7kA 234 27.03 c.1.10.1 85374 2q09A 416 27.20 1bf6A 291 27.99 c.1.9.3 29065 1oj7A 408 28.63 e.22.1.2 103971 1yacA 208 31.85 c.33.1.3 31757 2nlyA 245 31.97 c.6.2.7 138364 1rhcA 330 32.02 c.1.16.3 97468 2qv5A 261 32.65 3b9oA 440 32.71 2bgsA 344 33.09 1muwA 386 34.55 c.1.15.3 79495 1o2dA 371 34.91 e.22.1.2 86591 1rvkA 382 35.02 c.1.11.2,d.54.1.1 97928,97929 2ogyA 262 36.39 2pceA 386 36.53 2hejA 323 37.58 1qgoA 264 38.11 c.92.1.2 35596 1zp4A 304 38.15 1tjyA 316 38.81 c.93.1.1 107062 1nqkA 381 38.95 c.1.16.4 92050 1ur4A 399 39.51 c.1.8.3 113402 1vbuA 328 41.21 c.1.8.3 119963 1k0fA 277 41.96 c.92.2.2 71974 2depA 356 42.56 1gqnA 252 43.30 c.1.10.1 90514 1aq0A 306 43.56 c.1.8.3 28842 2pgfA 371 43.87 2e7fA 262 45.79 1bg4A 302 46.15 c.1.8.3 28806 1ur3M 319 46.48 c.1.7.1 99806 1rrmA 386 46.81 e.22.1.2 105081 1xrtA 467 46.97 b.92.1.3,c.1.9.6 122258,122259 1yx1A 264 47.85 c.1.15.7 124169 2bw0A 329 48.22 b.46.1.1,c.65.1.1 129303,129304 1w8sA 263 48.96 c.1.10.1 120744 1v93A 296 49.07 c.1.23.1 100532 1gveA 327 50.15 c.1.7.1 70597 1ynpA 317 51.25 1vcvA 226 51.26 c.1.10.1 119988 1ezwA 349 51.31 c.1.16.3 29558 1toaA 313 51.38 c.92.2.2 35598 3c8nA 356 52.01 1v0lA 313 52.25 c.1.8.3 108207 1wx0A 223 52.41 c.1.10.1 121382 2qulA 290 53.09 1rk6A 496 54.28 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1k92A 455 56.14 c.26.2.1,d.210.1.1 68325,68326 1twiA 434 57.84 b.49.2.3,c.1.6.1 107399,107400 1g5bA 221 59.86 d.159.1.3 60261 1geqA 248 60.07 c.1.2.4 28589 3be7A 408 60.37 1vljA 407 60.83 e.22.1.2 108832 1vhcA 224 62.45 c.1.10.1 100661 2fn9A 290 64.36 2yw3A 207 65.52 2pljA 419 66.16 2f96A 224 66.48 c.55.3.5 133153 1xfcA 384 67.19 1yc5A 246 68.27 c.31.1.5 122910 1jq5A 370 69.57 e.22.1.2 67084 2cftA 298 69.85 2hbjA 410 70.30 a.60.8.4,c.55.3.5 136311,136312 1zjjA 263 72.13 1n82A 331 72.63 c.1.8.3 91703 2egzA 219 72.88 2ao0A 324 74.09 2puzA 419 76.19 2ps2A 371 76.26 1lqaA 346 76.73 c.1.7.1 84674 2dri 271 78.43 1vr6A 350 80.05 c.1.10.4 120439 2i2wA 212 80.93 2p3eA 420 82.16 2ioyA 283 83.15 1uu1A 335 83.73 c.67.1.1 99993 3ct2A 382 86.25 2qdeA 397 86.93 2igiA 180 87.45 2pg3A 232 88.17 2oa8A 233 88.57 2qu7A 288 88.89 1gudA 288 89.32 c.93.1.1 83326