# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.58e-19 1m65A 245 1.10e-14 c.6.3.1 84847 2anuA 255 2.39e-12 c.6.3.1 127058 2hnhA 910 3.92e-08 1v77A 212 7.04e-08 c.6.3.2 108402 2qahA 303 0.2132 2ffiA 288 0.5715 c.1.9.15 133385 1j6oA 268 0.8179 c.1.9.12 77088 2gokA 429 1.139 1ybqB 390 1.529 2ob3A 330 1.730 1i60A 278 2.349 c.1.15.4 71118 2gzxA 265 2.699 2icsA 379 2.778 b.92.1.8,c.1.9.14 137241,137242 2vc7A 314 3.082 1vflA 356 3.263 c.1.9.1 120041 2z00A 426 3.651 1qtwA 285 4.208 c.1.15.1 29392 2g3fA 421 4.910 1gkrA 458 4.982 b.92.1.3,c.1.9.6 70251,70252 1yw1A 442 4.986 c.1.16.4 124130 1vbjA 281 5.679 2pajA 492 7.538 3brqA 296 7.788 2opjA 327 8.139 1xwyA 264 8.190 c.1.9.12 122411 1o12A 376 8.473 b.92.1.5,c.1.9.10 80758,80759 3ce9A 354 8.886 1tvlA 454 9.136 c.1.16.4 107366 1k77A 260 9.297 c.1.15.5 72096 1zzmA 259 9.550 c.1.9.12 125911 1g5bA 221 10.87 d.159.1.3 60261 1f07A 321 11.23 c.1.16.3 59560 2i7gA 376 11.27 1zgdA 312 11.41 2qw5A 335 11.60 1gkpA 458 12.23 b.92.1.3,c.1.9.6 70231,70232 2qt3A 403 12.64 2cygA 312 12.84 c.1.8.3 131025 2q09A 416 13.02 1f6yA 262 14.18 c.1.21.2 29673 1o0yA 260 14.54 c.1.10.1 80756 2b81A 323 15.22 3cjpA 272 15.68 1hw6A 278 15.70 c.1.7.1 61296 2hbjA 410 16.20 a.60.8.4,c.55.3.5 136311,136312 2fb2A 340 17.96 3b9oA 440 18.57 1rhcA 330 19.54 c.1.16.3 97468 1yacA 208 21.87 c.33.1.3 31757 2q02A 272 22.10 1o2dA 371 22.94 e.22.1.2 86591 1a0cA 438 23.27 c.1.15.3 29529 1n7kA 234 24.48 c.1.10.1 85374 3cnyA 301 25.75 2d5rA 252 26.72 2g0wA 296 26.85 c.1.15.4 134503 7odcA 424 27.08 b.49.2.3,c.1.6.1 26488,28650 2pz0A 252 27.23 3c86A 328 27.90 2hk0A 309 28.14 1cl1A 395 28.27 c.67.1.3 34395 1j96A 323 28.73 c.1.7.1 71616 1tjyA 316 28.96 c.93.1.1 107062 1rk6A 496 29.48 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1ur3M 319 30.19 c.1.7.1 99806 2nlyA 245 30.44 c.6.2.7 138364 3be7A 408 33.45 1zp4A 304 34.22 1oj7A 408 34.79 e.22.1.2 103971 1us0A 316 35.89 c.1.7.1 99850 1ur4A 399 36.57 c.1.8.3 113402 1ra0A 430 36.62 b.92.1.2,c.1.9.5 111756,111757 2puzA 419 37.19 2i57A 438 37.58 2f96A 224 37.86 c.55.3.5 133153 1vcvA 226 38.17 c.1.10.1 119988 1tv8A 340 38.53 c.1.28.3 107352 1toaA 313 38.72 c.92.2.2 35598 1s1pA 331 38.76 c.1.7.1 98350 1qwkA 317 39.50 c.1.7.1 96482 2bgsA 344 39.88 2vhlA 396 41.08 1qgoA 264 41.33 c.92.1.2 35596 1k0fA 277 41.88 c.92.2.2 71974 2imrA 420 41.97 1kbjA 412 42.90 c.1.4.1 72280 1aq0A 306 44.17 c.1.8.3 28842 2depA 356 44.53 1zuaX 317 44.92 1yixA 265 45.25 c.1.9.12 123371 2o55A 258 45.74 2igiA 180 45.90 1gveA 327 46.71 c.1.7.1 70597 1frb 315 46.79 1k92A 455 48.89 c.26.2.1,d.210.1.1 68325,68326 1nqkA 381 49.97 c.1.16.4 92050 2yx0A 342 50.05 2hejA 323 50.84 3bofA 566 51.22 1xngA 268 51.61 c.26.2.1 122186 1kbpA 432 53.23 b.1.12.1,d.159.1.1 22349,42068 2hfsA 332 54.55 1jq5A 370 55.33 e.22.1.2 67084 2nqlA 388 56.42 1wx0A 223 56.73 c.1.10.1 121382 2qu7A 288 57.00 1ezwA 349 57.91 c.1.16.3 29558 1rrmA 386 57.99 e.22.1.2 105081 1yrrA 382 58.88 b.92.1.5,c.1.9.10 123935,123936 1a0dA 440 59.14 c.1.15.3 29533 2nxfA 322 62.38 2pn1A 331 62.57 1vbuA 328 65.28 c.1.8.3 119963 1q6zA 528 65.55 c.31.1.3,c.36.1.5,c.36.1.9 111655,111656,111657 1cvl 319 67.39 1oltA 457 68.75 c.1.28.2 93334 2b34A 199 71.75 2qv5A 261 72.44 1dqsA 393 75.18 e.22.1.1 43347 3clwA 507 75.29 1j5pA 253 75.32 d.81.1.3,c.2.1.3 71577,83092 2omkA 231 76.05 2qulA 290 76.38 1y97A 238 76.91 c.55.3.5 122773 2dskA 311 81.66 2pceA 386 82.70 2ioyA 283 83.73 1twiA 434 83.81 b.49.2.3,c.1.6.1 107399,107400 1bf6A 291 84.95 c.1.9.3 29065 1mi3A 322 85.82 c.1.7.1 91274 1v0lA 313 86.49 c.1.8.3 108207 2pbqA 178 86.68 2ejaA 338 87.03 1r85A 379 87.54 c.1.8.3 104839 1bg4A 302 89.05 c.1.8.3 28806 1q7zA 566 89.06 c.1.21.2,c.1.26.1 96090,96091