# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.00e-17 1m65A 245 7.07e-13 c.6.3.1 84847 2anuA 255 3.52e-11 c.6.3.1 127058 2hnhA 910 1.39e-07 1v77A 212 3.40e-07 c.6.3.2 108402 1j6oA 268 0.5621 c.1.9.12 77088 2qahA 303 0.9242 2ob3A 330 1.350 2ffiA 288 1.378 c.1.9.15 133385 1vflA 356 1.388 c.1.9.1 120041 2gzxA 265 1.632 1i60A 278 2.001 c.1.15.4 71118 2gokA 429 2.419 2vc7A 314 3.068 1xwyA 264 3.240 c.1.9.12 122411 1zzmA 259 3.827 c.1.9.12 125911 2opjA 327 4.159 1yw1A 442 5.211 c.1.16.4 124130 2g3fA 421 5.414 1vbjA 281 5.414 1ybqB 390 5.888 1gkrA 458 6.169 b.92.1.3,c.1.9.6 70251,70252 1qtwA 285 6.382 c.1.15.1 29392 1hw6A 278 7.019 c.1.7.1 61296 1zgdA 312 7.276 1f07A 321 7.981 c.1.16.3 59560 2icsA 379 7.991 b.92.1.8,c.1.9.14 137241,137242 2qt3A 403 9.099 3brqA 296 9.100 1tvlA 454 9.704 c.1.16.4 107366 2i7gA 376 10.06 1k77A 260 10.92 c.1.15.5 72096 2z00A 426 11.22 2pajA 492 11.63 2b81A 323 12.65 2fb2A 340 12.75 2q02A 272 12.83 1gkpA 458 13.36 b.92.1.3,c.1.9.6 70231,70232 2cygA 312 13.50 c.1.8.3 131025 2qw5A 335 13.59 2q09A 416 14.22 1a0cA 438 14.75 c.1.15.3 29529 7odcA 424 15.48 b.49.2.3,c.1.6.1 26488,28650 1o0yA 260 15.83 c.1.10.1 80756 1yacA 208 16.81 c.33.1.3 31757 3ce9A 354 17.25 3c86A 328 18.54 1zp4A 304 18.66 2g0wA 296 20.28 c.1.15.4 134503 1tv8A 340 20.68 c.1.28.3 107352 1us0A 316 21.83 c.1.7.1 99850 1ur3M 319 22.16 c.1.7.1 99806 2hbjA 410 22.61 a.60.8.4,c.55.3.5 136311,136312 2nqlA 388 24.99 1zuaX 317 25.66 1k92A 455 26.19 c.26.2.1,d.210.1.1 68325,68326 3cnyA 301 27.13 1f6yA 262 27.36 c.1.21.2 29673 3b9oA 440 27.38 1g5bA 221 27.75 d.159.1.3 60261 1a0dA 440 28.40 c.1.15.3 29533 1o12A 376 28.57 b.92.1.5,c.1.9.10 80758,80759 2nlyA 245 29.49 c.6.2.7 138364 2pz0A 252 30.06 1o2dA 371 30.40 e.22.1.2 86591 1wx0A 223 32.38 c.1.10.1 121382 1frb 315 32.83 1n7kA 234 33.64 c.1.10.1 85374 1gveA 327 35.65 c.1.7.1 70597 1qwkA 317 35.67 c.1.7.1 96482 1yixA 265 35.95 c.1.9.12 123371 1j96A 323 36.00 c.1.7.1 71616 1toaA 313 36.12 c.92.2.2 35598 1i0dA 332 36.44 c.1.9.3 61487 3be7A 408 36.51 1nqkA 381 36.54 c.1.16.4 92050 1aq0A 306 36.60 c.1.8.3 28842 3bofA 566 37.37 1rk6A 496 37.39 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1vcvA 226 38.90 c.1.10.1 119988 2o55A 258 40.01 2b34A 199 40.10 3ciwA 348 41.37 1bg4A 302 41.62 c.1.8.3 28806 2bgsA 344 41.76 2hejA 323 42.17 1mi3A 322 43.48 c.1.7.1 91274 1ezwA 349 44.45 c.1.16.3 29558 1vbuA 328 44.53 c.1.8.3 119963 2puzA 419 45.38 2pceA 386 46.18 2hk0A 309 46.79 1tjyA 316 47.82 c.93.1.1 107062 1lqaA 346 48.42 c.1.7.1 84674 1rhcA 330 48.53 c.1.16.3 97468 2depA 356 48.74 1xngA 268 48.75 c.26.2.1 122186 1qgoA 264 49.53 c.92.1.2 35596 1ra0A 430 49.83 b.92.1.2,c.1.9.5 111756,111757 1rvkA 382 50.36 c.1.11.2,d.54.1.1 97928,97929 1lucA 355 53.31 c.1.16.1 29547 2cftA 298 53.35 1s1pA 331 53.64 c.1.7.1 98350 2f96A 224 53.75 c.55.3.5 133153 1k0fA 277 53.81 c.92.2.2 71974 2qu7A 288 54.98 3cjpA 272 55.08 2qv5A 261 55.73 1cl1A 395 60.81 c.67.1.3 34395 2yx0A 342 60.88 2d5rA 252 61.52 1oj7A 408 61.99 e.22.1.2 103971 1zjjA 263 62.39 1rrmA 386 66.67 e.22.1.2 105081 1v0lA 313 68.35 c.1.8.3 108207 2i57A 438 69.89 1jq5A 370 70.47 e.22.1.2 67084 1ynpA 317 71.54 1fobA 334 71.63 c.1.8.3 83255 1oltA 457 75.35 c.1.28.2 93334 1bf6A 291 78.09 c.1.9.3 29065 1v5xA 203 78.86 c.1.2.4 100377 1iq8A 582 80.45 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2dri 271 80.67 1twiA 434 80.93 b.49.2.3,c.1.6.1 107399,107400 2pgfA 371 81.05 2igiA 180 83.37 2qulA 290 83.88 2pljA 419 84.81 2omkA 231 86.38 1kbjA 412 86.53 c.1.4.1 72280 1muwA 386 86.55 c.1.15.3 79495 2imrA 420 87.34 1korA 400 87.81 c.26.2.1,d.210.1.1 72824,72825 2pn1A 331 88.34