# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.46e-18 1m65A 245 2.70e-13 c.6.3.1 84847 2anuA 255 1.89e-11 c.6.3.1 127058 2hnhA 910 1.04e-07 1v77A 212 3.23e-07 c.6.3.2 108402 1j6oA 268 0.5569 c.1.9.12 77088 2qahA 303 0.7406 2ffiA 288 1.316 c.1.9.15 133385 2ob3A 330 1.375 2gzxA 265 1.503 1i60A 278 1.617 c.1.15.4 71118 2gokA 429 2.776 1qtwA 285 3.128 c.1.15.1 29392 2vc7A 314 3.342 2pajA 492 4.411 1zzmA 259 4.725 c.1.9.12 125911 1vflA 356 4.826 c.1.9.1 120041 1yw1A 442 5.345 c.1.16.4 124130 1ybqB 390 5.382 2icsA 379 5.617 b.92.1.8,c.1.9.14 137241,137242 1tvlA 454 6.045 c.1.16.4 107366 2opjA 327 6.145 1xwyA 264 6.378 c.1.9.12 122411 2i7gA 376 6.902 1gkrA 458 7.135 b.92.1.3,c.1.9.6 70251,70252 1k77A 260 7.563 c.1.15.5 72096 1vbjA 281 7.761 2q02A 272 7.931 1zgdA 312 8.087 1f07A 321 8.391 c.1.16.3 59560 2b81A 323 9.243 3brqA 296 10.12 2qw5A 335 10.47 2qt3A 403 10.84 2g3fA 421 11.35 1hw6A 278 11.46 c.1.7.1 61296 3cnyA 301 12.09 1o0yA 260 13.25 c.1.10.1 80756 1gkpA 458 13.67 b.92.1.3,c.1.9.6 70231,70232 3ce9A 354 15.79 2z00A 426 16.33 2g0wA 296 16.66 c.1.15.4 134503 1a0cA 438 17.08 c.1.15.3 29529 2cygA 312 18.22 c.1.8.3 131025 1zp4A 304 18.91 2fb2A 340 19.04 3c86A 328 19.07 7odcA 424 19.35 b.49.2.3,c.1.6.1 26488,28650 1us0A 316 19.90 c.1.7.1 99850 2hbjA 410 20.54 a.60.8.4,c.55.3.5 136311,136312 1yacA 208 21.74 c.33.1.3 31757 1tv8A 340 23.21 c.1.28.3 107352 1k92A 455 23.21 c.26.2.1,d.210.1.1 68325,68326 2depA 356 24.19 1yixA 265 25.09 c.1.9.12 123371 1n7kA 234 25.39 c.1.10.1 85374 1j96A 323 26.47 c.1.7.1 71616 2hk0A 309 28.80 1rhcA 330 29.52 c.1.16.3 97468 1frb 315 29.64 3cjpA 272 30.17 3b9oA 440 30.34 1vbuA 328 30.67 c.1.8.3 119963 1f6yA 262 30.84 c.1.21.2 29673 1aq0A 306 30.93 c.1.8.3 28842 1bg4A 302 31.01 c.1.8.3 28806 1zuaX 317 31.96 1ur3M 319 32.22 c.1.7.1 99806 2q09A 416 32.34 1a0dA 440 33.62 c.1.15.3 29533 1s1pA 331 33.93 c.1.7.1 98350 1o12A 376 34.37 b.92.1.5,c.1.9.10 80758,80759 1qwkA 317 34.55 c.1.7.1 96482 1o2dA 371 34.96 e.22.1.2 86591 1oj7A 408 35.72 e.22.1.2 103971 2nlyA 245 35.87 c.6.2.7 138364 1muwA 386 35.89 c.1.15.3 79495 2hejA 323 36.36 1gveA 327 36.53 c.1.7.1 70597 1toaA 313 36.92 c.92.2.2 35598 2i57A 438 40.02 1i0dA 332 40.35 c.1.9.3 61487 1mi3A 322 40.79 c.1.7.1 91274 1rk6A 496 40.82 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2bgsA 344 41.91 1qgoA 264 42.55 c.92.1.2 35596 1nqkA 381 42.68 c.1.16.4 92050 2pz0A 252 42.98 2qv5A 261 43.30 1rrmA 386 44.03 e.22.1.2 105081 2pceA 386 44.23 1g5bA 221 45.07 d.159.1.3 60261 1vcvA 226 45.98 c.1.10.1 119988 1ezwA 349 46.43 c.1.16.3 29558 1k0fA 277 46.46 c.92.2.2 71974 1wx0A 223 46.64 c.1.10.1 121382 1q7zA 566 47.22 c.1.21.2,c.1.26.1 96090,96091 1tjyA 316 47.41 c.93.1.1 107062 3ciwA 348 47.90 1lqaA 346 48.04 c.1.7.1 84674 2nqlA 388 48.81 2puzA 419 49.84 3bofA 566 51.59 1korA 400 53.78 c.26.2.1,d.210.1.1 72824,72825 1r85A 379 54.54 c.1.8.3 104839 1v0lA 313 55.97 c.1.8.3 108207 1ur4A 399 56.02 c.1.8.3 113402 2q8xA 331 58.42 2d5rA 252 58.65 2pthA 193 59.90 c.56.3.1 33793 2qulA 290 61.06 1xngA 268 61.47 c.26.2.1 122186 3be7A 408 61.76 2ekcA 262 63.57 1zjjA 263 65.53 1lucA 355 65.58 c.1.16.1 29547 1kfcA 268 65.82 c.1.2.4 77371 1v93A 296 68.32 c.1.23.1 100532 2b34A 199 70.22 2qu7A 288 70.37 1cl1A 395 70.69 c.67.1.3 34395 1rvkA 382 70.76 c.1.11.2,d.54.1.1 97928,97929 2imrA 420 75.38 2omkA 231 75.53 1gqnA 252 77.87 c.1.10.1 90514 2o55A 258 78.33 2f96A 224 80.31 c.55.3.5 133153 1kbjA 412 80.79 c.1.4.1 72280 2z2iA 191 82.70 2igiA 180 83.19 1ta3B 303 83.32 c.1.8.3 106732 1ra0A 430 83.85 b.92.1.2,c.1.9.5 111756,111757 2nxfA 322 88.06 1qw9A 502 88.53 b.71.1.2,c.1.8.3 96466,96467 1fobA 334 89.29 c.1.8.3 83255