# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 7.10e-12 1m65A 245 3.43e-09 c.6.3.1 84847 2anuA 255 7.14e-07 c.6.3.1 127058 1v77A 212 0.000137 c.6.3.2 108402 2hnhA 910 0.000390 2ffiA 288 0.3529 c.1.9.15 133385 2qahA 303 1.176 2gzxA 265 1.260 2vc7A 314 1.653 1j6oA 268 1.883 c.1.9.12 77088 1qtwA 285 1.948 c.1.15.1 29392 3cjpA 272 2.382 2gokA 429 2.464 1i60A 278 3.165 c.1.15.4 71118 1bf6A 291 3.736 c.1.9.3 29065 1zzmA 259 4.317 c.1.9.12 125911 2qw5A 335 4.893 1a0dA 440 5.218 c.1.15.3 29533 1vflA 356 5.348 c.1.9.1 120041 2pajA 492 6.956 2ob3A 330 7.162 2q09A 416 7.317 2depA 356 7.327 1rk6A 496 8.346 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 3cnyA 301 9.837 2puzA 419 10.21 2qt3A 403 10.89 1f6yA 262 10.94 c.1.21.2 29673 1n7kA 234 12.62 c.1.10.1 85374 2q02A 272 12.92 3be7A 408 13.46 1ur4A 399 13.65 c.1.8.3 113402 1nq6A 302 14.05 c.1.8.3 92046 2icsA 379 14.39 b.92.1.8,c.1.9.14 137241,137242 2cygA 312 15.41 c.1.8.3 131025 2nxfA 322 15.74 1aq0A 306 16.59 c.1.8.3 28842 3c86A 328 17.05 2z00A 426 17.11 1vcvA 226 17.48 c.1.10.1 119988 1a0cA 438 18.22 c.1.15.3 29529 1k77A 260 18.36 c.1.15.5 72096 2hk0A 309 18.41 1i0dA 332 20.77 c.1.9.3 61487 1ynpA 317 21.74 2g3fA 421 21.96 1xyzA 347 22.10 c.1.8.3 28804 1yixA 265 23.19 c.1.9.12 123371 1h5yA 253 23.51 c.1.2.1 65638 2q8xA 331 24.24 2v3gA 283 24.43 3bofA 566 24.85 1ra0A 430 24.85 b.92.1.2,c.1.9.5 111756,111757 1qo2A 241 25.68 c.1.2.1 28533 1ybqB 390 26.14 1muwA 386 27.37 c.1.15.3 79495 2yxtA 312 27.60 1bg4A 302 27.80 c.1.8.3 28806 1g0cA 364 28.10 c.1.8.3 60165 1qwgA 251 28.42 c.1.27.1 96473 1v0lA 313 28.51 c.1.8.3 108207 2g0wA 296 29.01 c.1.15.4 134503 2qdeA 397 29.65 1yxyA 234 29.75 c.1.2.5 124203 2qpxA 376 30.09 2ogyA 262 30.46 1twiA 434 31.07 b.49.2.3,c.1.6.1 107399,107400 1ceo 343 32.26 1gqnA 252 32.45 c.1.10.1 90514 1rh9A 373 32.70 c.1.8.3 118773 1zp4A 304 32.92 1xwyA 264 33.49 c.1.9.12 122411 1o0yA 260 34.89 c.1.10.1 80756 1tk9A 188 37.32 c.80.1.3 107082 1vbuA 328 38.33 c.1.8.3 119963 1ceoA 343 38.92 c.1.8.3 28808 1g5bA 221 39.86 d.159.1.3 60261 2jc4A 256 40.29 2ps2A 371 40.29 2e7fA 262 41.48 1uozA 315 42.11 c.6.1.1 113354 1tv8A 340 42.56 c.1.28.3 107352 2dskA 311 42.75 2pn1A 331 43.13 2hy1A 280 43.28 2citA 282 43.63 c.1.8.3 130499 1xrtA 467 43.89 b.92.1.3,c.1.9.6 122258,122259 1ur3M 319 44.66 c.1.7.1 99806 1w8sA 263 45.41 c.1.10.1 120744 1hw6A 278 46.39 c.1.7.1 61296 1w5qA 337 46.80 1ta3B 303 47.27 c.1.8.3 106732 2o55A 258 47.64 2a0nA 265 48.66 c.1.2.1 125961 1eceA 358 48.95 c.1.8.3 28813 2i57A 438 49.07 3ciwA 348 49.67 2o3hA 285 49.97 2fb2A 340 51.27 2aamA 309 51.54 c.1.8.15 126489 1lqaA 346 51.56 c.1.7.1 84674 2qcvA 332 52.69 3brqA 296 53.73 1r85A 379 54.17 c.1.8.3 104839 1qgoA 264 54.66 c.92.1.2 35596 1m5wA 243 54.89 c.1.24.1 84836 1zgdA 312 54.96 2yx0A 342 55.96 2d5rA 252 56.51 1edg 380 57.78 2c4nA 250 58.33 c.108.1.14 129837 2ejaA 338 59.56 1vr6A 350 59.73 c.1.10.4 120439 1kkoA 413 61.73 c.1.11.2,d.54.1.1 68675,68676 1o2dA 371 62.21 e.22.1.2 86591 2ei9A 240 62.59 1rrmA 386 64.27 e.22.1.2 105081 3ct2A 382 66.40 2yvaA 196 66.53 1n82A 331 66.88 c.1.8.3 91703 1vbjA 281 67.36 2zadA 345 68.95 1thfD 253 69.90 c.1.2.1 28535 2i2wA 212 71.01 3buvA 326 71.36 1zjjA 263 71.78 2j6vA 301 71.83 2o14A 375 72.27 2omkA 231 72.44 2d1zA 436 72.44 1tz9A 367 72.58 c.1.15.6 107466 1gkpA 458 72.64 b.92.1.3,c.1.9.6 70231,70232 1nu5A 370 73.01 c.1.11.2,d.54.1.1 92183,92184 1s1pA 331 73.35 c.1.7.1 98350 1gkrA 458 73.77 b.92.1.3,c.1.9.6 70251,70252 2nqlA 388 77.83 1m6jA 261 78.29 c.1.1.1 78693 2pgfA 371 78.59 1i7nA 309 78.97 c.30.1.5,d.142.1.3 83681,83682 1us0A 316 81.24 c.1.7.1 99850 2qv5A 261 82.14 1oj7A 408 82.75 e.22.1.2 103971 1gca 309 83.77 2qulA 290 83.83 2hejA 323 85.35 3co4A 312 85.56 1xzwA 426 86.13 b.1.12.1,d.159.1.1 116270,116271 2qs8A 418 87.22 3clwA 507 87.24 2agkA 260 89.72