# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.26e-13 1m65A 245 2.05e-10 c.6.3.1 84847 2anuA 255 2.10e-08 c.6.3.1 127058 2hnhA 910 1.74e-05 1v77A 212 1.97e-05 c.6.3.2 108402 2qahA 303 0.6472 2ffiA 288 0.7745 c.1.9.15 133385 2gokA 429 1.169 2vc7A 314 1.448 1j6oA 268 1.766 c.1.9.12 77088 2icsA 379 2.224 b.92.1.8,c.1.9.14 137241,137242 2q09A 416 2.581 2pajA 492 2.710 1i60A 278 2.777 c.1.15.4 71118 2gzxA 265 3.626 2g3fA 421 3.745 1vflA 356 4.090 c.1.9.1 120041 1qtwA 285 4.261 c.1.15.1 29392 2qt3A 403 4.395 3be7A 408 4.824 3cjpA 272 5.200 1ybqB 390 7.141 2depA 356 8.037 1vbjA 281 8.891 2qw5A 335 10.26 2puzA 419 10.59 1g5bA 221 10.87 d.159.1.3 60261 1f6yA 262 11.17 c.1.21.2 29673 1gkpA 458 11.27 b.92.1.3,c.1.9.6 70231,70232 2o55A 258 11.35 1a0dA 440 11.54 c.1.15.3 29533 1zzmA 259 13.42 c.1.9.12 125911 2qulA 290 14.42 2q8xA 331 15.06 2hy1A 280 15.53 1ur3M 319 15.56 c.1.7.1 99806 1r85A 379 16.74 c.1.8.3 104839 1s1pA 331 16.79 c.1.7.1 98350 2q02A 272 17.89 2dskA 311 18.59 1ur4A 399 18.69 c.1.8.3 113402 2opjA 327 18.81 1twiA 434 18.96 b.49.2.3,c.1.6.1 107399,107400 1muwA 386 19.21 c.1.15.3 79495 2bgsA 344 20.27 1o12A 376 20.95 b.92.1.5,c.1.9.10 80758,80759 1qgoA 264 21.22 c.92.1.2 35596 1rhcA 330 21.62 c.1.16.3 97468 1rk6A 496 22.01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1ra0A 430 22.39 b.92.1.2,c.1.9.5 111756,111757 2ob3A 330 22.44 1k77A 260 22.88 c.1.15.5 72096 2r6oA 294 23.68 2nxfA 322 23.83 2agkA 260 24.17 1bf6A 291 25.06 c.1.9.3 29065 1us0A 316 25.30 c.1.7.1 99850 1vkhA 273 25.44 c.69.1.32 108662 2fb2A 340 25.57 3ciwA 348 26.82 1rrmA 386 26.95 e.22.1.2 105081 1j96A 323 29.38 c.1.7.1 71616 1lqaA 346 29.50 c.1.7.1 84674 1gveA 327 30.01 c.1.7.1 70597 2qv5A 261 30.12 3buvA 326 30.31 1uozA 315 30.70 c.6.1.1 113354 1i0dA 332 30.77 c.1.9.3 61487 1xwyA 264 31.12 c.1.9.12 122411 3cnyA 301 31.28 2z00A 426 31.63 1xyzA 347 32.08 c.1.8.3 28804 2nqlA 388 32.25 2imrA 420 32.27 3bofA 566 32.85 1frb 315 33.03 1zgdA 312 33.88 1n7kA 234 35.31 c.1.10.1 85374 2ox4A 403 35.35 2h1vA 310 35.52 2ps2A 371 36.24 3brqA 296 37.29 1aq0A 306 38.57 c.1.8.3 28842 1e8cA 498 38.62 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1o2dA 371 39.64 e.22.1.2 86591 2nlyA 245 40.22 c.6.2.7 138364 2pn1A 331 40.46 1qwkA 317 40.85 c.1.7.1 96482 3c86A 328 41.50 1a0cA 438 42.67 c.1.15.3 29529 1gkrA 458 43.48 b.92.1.3,c.1.9.6 70251,70252 2cygA 312 43.89 c.1.8.3 131025 1uteA 313 46.37 d.159.1.1 42078 2yx0A 342 47.07 2aamA 309 47.38 c.1.8.15 126489 1v0lA 313 47.71 c.1.8.3 108207 1hw6A 278 48.79 c.1.7.1 61296 3c8nA 356 51.04 1tv8A 340 51.22 c.1.28.3 107352 2o14A 375 52.85 2dxnA 274 53.02 3ce9A 354 53.25 2pgfA 371 53.82 1o0yA 260 54.02 c.1.10.1 80756 1zjjA 263 54.30 2pz0A 252 55.28 1n82A 331 56.66 c.1.8.3 91703 2pceA 386 57.46 1yacA 208 57.80 c.33.1.3 31757 1qo2A 241 58.70 c.1.2.1 28533 1mi3A 322 58.85 c.1.7.1 91274 2oodA 475 59.32 2hk0A 309 60.66 1vcvA 226 60.91 c.1.10.1 119988 3ch0A 272 61.24 1zuaX 317 61.30 2hejA 323 61.44 1dozA 309 62.13 c.92.1.1 35592 2ogyA 262 62.46 1oj7A 408 63.04 e.22.1.2 103971 1nrwA 288 63.25 c.108.1.10 86128 2gl5A 410 64.25 c.1.11.2,d.54.1.1 135336,135337 2ei9A 240 66.33 7odcA 424 66.49 b.49.2.3,c.1.6.1 26488,28650 1kbjA 412 66.75 c.1.4.1 72280 2p8bA 369 67.00 2gdqA 382 68.91 c.1.11.2,d.54.1.1 135020,135021 2a0nA 265 68.91 c.1.2.1 125961 1g0cA 364 70.89 c.1.8.3 60165 1gca 309 72.44 1vbuA 328 73.03 c.1.8.3 119963 2g0wA 296 73.05 c.1.15.4 134503 3clwA 507 73.18 2b81A 323 74.04 1rvkA 382 74.81 c.1.11.2,d.54.1.1 97928,97929 1h5yA 253 76.58 c.1.2.1 65638 1w5qA 337 77.49 1tjyA 316 79.34 c.93.1.1 107062 1kkoA 413 79.43 c.1.11.2,d.54.1.1 68675,68676 2yxtA 312 80.31 1o1zA 234 80.33 c.1.18.3 86555 2dqwA 294 81.82 1nq6A 302 82.52 c.1.8.3 92046 1yxyA 234 83.63 c.1.2.5 124203 1yrrA 382 83.89 b.92.1.5,c.1.9.10 123935,123936 1ynpA 317 85.30 1jvnA 555 85.96 c.1.2.1,c.23.16.1 67355,67356 2ejaA 338 86.28 1ceoA 343 86.44 c.1.8.3 28808 1toaA 313 88.21 c.92.2.2 35598 2i5gA 325 88.35 2p3eA 420 88.60 2e7fA 262 89.28 1eceA 358 89.58 c.1.8.3 28813 1vzwA 244 89.76 c.1.2.1 120553 1kbpA 432 89.81 b.1.12.1,d.159.1.1 22349,42068