# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.54e-08 1m65A 245 1.54e-05 c.6.3.1 84847 2anuA 255 0.002727 c.6.3.1 127058 2hnhA 910 0.1151 1v77A 212 1.076 c.6.3.2 108402 2qt3A 403 1.265 1gkpA 458 3.920 b.92.1.3,c.1.9.6 70231,70232 1yhtA 367 4.298 c.1.8.6 123213 1tv8A 340 5.490 c.1.28.3 107352 2fb2A 340 5.958 3be7A 408 6.445 1qo2A 241 7.031 c.1.2.1 28533 2gduA 504 7.609 b.71.1.1,c.1.8.1 135032,135033 1jndA 420 7.844 c.1.8.5,d.26.3.1 71757,71758 1wdpA 495 9.397 c.1.8.1 120907 3cjpA 272 9.99 2qw5A 335 10.34 2cygA 312 11.44 c.1.8.3 131025 1ub3A 220 11.55 c.1.10.1 88395 2a5hA 416 13.35 2agkA 260 13.65 2puzA 419 14.01 1ra0A 430 14.05 b.92.1.2,c.1.9.5 111756,111757 1dxeA 256 14.10 c.1.12.5 29310 2ffiA 288 14.46 c.1.9.15 133385 1i0dA 332 15.26 c.1.9.3 61487 2nxfA 322 16.33 2podA 410 17.39 1qgoA 264 17.61 c.92.1.2 35596 2i57A 438 17.66 1ceo 343 18.08 2gzxA 265 18.19 2gokA 429 18.87 1yacA 208 20.00 c.33.1.3 31757 1vemA 516 22.50 b.3.1.1,c.1.8.1 120021,120022 1gkrA 458 23.35 b.92.1.3,c.1.9.6 70251,70252 1vbuA 328 23.36 c.1.8.3 119963 1r7aA 504 23.61 b.71.1.1,c.1.8.1 97192,97193 2rdxA 379 23.73 2h8zA 359 23.82 1zzmA 259 24.01 c.1.9.12 125911 1n82A 331 24.05 c.1.8.3 91703 1o98A 511 24.16 c.105.1.1,c.76.1.3 86684,86685 1zp4A 304 24.33 1yixA 265 24.63 c.1.9.12 123371 1yrrA 382 24.81 b.92.1.5,c.1.9.10 123935,123936 1xrtA 467 25.76 b.92.1.3,c.1.9.6 122258,122259 2pc8A 400 26.53 1xyzA 347 27.57 c.1.8.3 28804 2p8bA 369 27.74 1vcvA 226 27.96 c.1.10.1 119988 2eplX 627 28.10 3c86A 328 28.80 2hzgA 401 29.38 3brqA 296 30.45 2depA 356 30.51 3canA 182 31.01 1hdiA 413 31.40 c.86.1.1 60964 1bf6A 291 31.71 c.1.9.3 29065 2hk0A 309 31.87 3clwA 507 32.20 2ps2A 371 32.59 2pceA 386 34.18 1qtwA 285 34.48 c.1.15.1 29392 2g0wA 296 35.47 c.1.15.4 134503 1rvkA 382 35.48 c.1.11.2,d.54.1.1 97928,97929 2v5jA 287 35.55 1m5wA 243 35.61 c.1.24.1 84836 2ftwA 521 35.95 b.92.1.3,c.1.9.6 134083,134084 1vjzA 341 35.99 c.1.8.3 100838 1gveA 327 37.49 c.1.7.1 70597 1vc4A 254 37.74 c.1.2.4 100557 1n7kA 234 37.95 c.1.10.1 85374 1z7bA 358 37.95 c.2.1.2 124599 1hrkA 359 38.64 c.92.1.1 61228 2aamA 309 39.09 c.1.8.15 126489 1ceoA 343 39.60 c.1.8.3 28808 2fvkA 559 39.68 b.92.1.3,c.1.9.6 134204,134205 2z00A 426 39.68 1snyA 267 39.72 c.2.1.2 105833 1ek6A 348 41.10 c.2.1.2 29800 2ox4A 403 41.48 2qahA 303 42.45 1frb 315 42.61 1lwjA 441 42.73 b.71.1.1,c.1.8.1 74303,74304 1ynpA 317 43.24 2oz8A 389 43.60 2r6oA 294 43.62 2h0rA 216 43.91 1mzhA 225 44.15 c.1.10.1 79698 1i60A 278 44.38 c.1.15.4 71118 2i9uA 439 44.55 1q7zA 566 45.31 c.1.21.2,c.1.26.1 96090,96091 2q02A 272 46.53 1uuqA 440 47.95 c.1.8.3 100015 1uteA 313 48.05 d.159.1.1 42078 16pk 415 48.07 1e6wA 260 48.23 c.2.1.2 59326 2qzuA 491 49.07 1ur4A 399 49.32 c.1.8.3 113402 2hbvA 334 49.56 c.1.9.15 136320 2z1mA 345 49.88 1lqaA 346 50.33 c.1.7.1 84674 1vliA 385 50.62 b.85.1.1,c.1.10.6 108830,108831 1yb1A 272 51.08 c.2.1.2 116599 2p10A 286 51.76 2ho4A 259 52.13 2d1yA 256 52.31 c.2.1.2 131151 1wraA 308 52.33 d.157.1.8 121190 1k77A 260 52.95 c.1.15.5 72096 1nvmA 345 53.04 a.5.7.1,c.1.10.5 86249,86250 1uluA 261 53.07 c.2.1.2 113292 2cw6A 298 53.29 16pkA 415 53.93 c.86.1.1 35454 2vc7A 314 55.32 1gr0A 367 55.71 c.2.1.3,d.81.1.3 70379,70380 1l6sA 323 55.93 c.1.10.3 73627 1jvnA 555 57.03 c.1.2.1,c.23.16.1 67355,67356 1ht6A 405 57.73 b.71.1.1,c.1.8.1 83629,83630 1vjpA 394 57.76 c.2.1.3,d.81.1.3 100828,100829 2f2hA 773 58.16 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 1aq0A 306 58.99 c.1.8.3 28842 1lt8A 406 59.02 c.1.26.1 78186 1gg4A 452 59.07 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2p91A 285 60.87 1phpA 394 61.14 c.86.1.1 35452 2bogX 286 62.10 1thfD 253 63.65 c.1.2.1 28535 1auoA 218 64.89 c.69.1.14 34716 1hdoA 206 64.96 c.2.1.2 60965 1muwA 386 65.56 c.1.15.3 79495 1wwkA 307 65.72 2qdeA 397 66.35 2qulA 290 66.44 2q8xA 331 66.53 2bs9A 503 67.05 b.71.1.2,c.1.8.3 129062,129063 2pozA 392 67.27 2f6kA 307 68.19 c.1.9.15 133047 1a0dA 440 68.51 c.1.15.3 29533 3cinA 394 69.14 1rh9A 373 70.26 c.1.8.3 118773 2hq1A 247 70.56 2ph3A 245 72.38 1im5A 180 72.60 c.33.1.3 66211 2oodA 475 72.71 2o23A 265 74.55 c.2.1.2 138884 2gdqA 382 74.65 c.1.11.2,d.54.1.1 135020,135021 1bli 483 74.80 2ag5A 246 75.04 c.2.1.2 126719 1vflA 356 75.28 c.1.9.1 120041 2rbkA 261 75.64 1n55A 251 75.97 c.1.1.1 80007 1ohlA 342 76.03 c.1.10.3 87035 1zmtA 254 76.26 c.2.1.2 125363 2c4nA 250 76.53 c.108.1.14 129837 1z45A 699 77.07 b.30.5.4,c.2.1.2 124427,124428 1xhcA 367 77.43 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1pz1A 333 77.44 c.1.7.1 95390 2qs8A 418 77.67 2r6jA 318 78.23 2obnA 349 79.75 2o14A 375 79.91 2exxA 306 80.02 1dysA 348 80.89 c.6.1.1 30669 2gk4A 232 81.18 1ybdA 239 83.12 c.73.1.3 122884 1ymqA 261 83.18 c.108.1.10 123707 1nowA 507 83.81 c.1.8.6,d.92.2.1 85936,85937 1us0A 316 83.98 c.1.7.1 99850 1j6oA 268 84.81 c.1.9.12 77088 1yzyA 413 84.93 c.146.1.1 124292 1wx0A 223 86.07 c.1.10.1 121382 1o1zA 234 86.42 c.1.18.3 86555 1f2dA 341 86.56 c.79.1.1 35298 2bllA 345 87.61 c.2.1.2 128733 2e6cA 244 87.61 1y6vA 449 87.85 c.76.1.1 122674 1zy9A 564 88.03 b.30.5.11,c.1.8.13 125813,125814 1pswA 348 88.68 c.87.1.7 88287 1wzlA 585 89.00 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1a0cA 438 89.62 c.1.15.3 29529