Best Alignments for T0440

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2yxoA	4.9402e-23	2yxoA/T0440-2yxoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1m65A	8.4525e-17	1m65A/T0440-1m65A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2anuA	4.0731e-13	2anuA/T0440-2anuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.1
2hnhA	5.6492e-09	2hnhA/T0440-2hnhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v77A	9.9117e-02	1v77A/T0440-1v77A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.6.3.2
2ob3A	4.4683e-01	2ob3A/T0440-2ob3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2p1jA	6.0686e-01	2p1jA/T0440-2p1jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gzxA	1.7797e+00	2gzxA/T0440-2gzxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wljA	2.2485e+00	1wljA/T0440-1wljA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.5
1w1iE	2.2525e+00	1w1iE/T0440-1w1iE-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
1yixA	2.7839e+00	1yixA/T0440-1yixA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
2d2jA	3.6003e+00	2d2jA/T0440-2d2jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.3
1xwyA	3.8650e+00	1xwyA/T0440-1xwyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1a4mA	3.9388e+00	1a4mA/T0440-1a4mA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1
1fkx	3.9922e+00	1fkx/T0440-1fkx-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1j9aA	4.1080e+00	1j9aA/T0440-1j9aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.55.3.5
2vc7A	4.4183e+00	2vc7A/T0440-2vc7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zzmA	4.7279e+00	1zzmA/T0440-1zzmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.12
1zuaX	4.9885e+00	1zuaX/T0440-1zuaX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2amxA	5.0006e+00	2amxA/T0440-2amxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.9.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001