# List of top-scoring protein chains for T0440.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.16e-29 1m65A 245 3.51e-22 c.6.3.1 84847 2anuA 255 3.97e-10 c.6.3.1 127058 2hpiA 1220 1.00e-07 2p1jA 186 4.15e-07 2hnhA 910 0.001063 2hqaA 917 0.001200 1z69A 327 0.1524 2f96A 224 0.2463 c.55.3.5 133153 1z6tA 591 0.3983 2eaxA 164 3.036 1f07A 321 3.074 c.1.16.3 59560 2eavA 165 3.079 2fug5 207 5.050 2amxA 376 5.800 c.1.9.1 127024 1vpyA 289 6.299 c.1.32.1 113997 2dr1A 386 7.512 2d69A 430 8.786 c.1.14.1,d.58.9.1 131292,131293 1j3uA 468 8.941 a.127.1.1 84078 2enxA 310 9.895 2gzxA 265 10.55 1zzmA 259 11.69 c.1.9.12 125911 2a4aA 281 12.18 c.1.10.1 126150 1ps6A 328 12.48 c.77.1.3 95070 1ptmA 329 12.49 c.77.1.3 95104 1ezwA 349 12.76 c.1.16.3 29558 1vh1A 256 13.06 c.68.1.13 100632 2igiA 180 14.08 1vjzA 341 14.85 c.1.8.3 100838 2hp0A 466 20.27 2hp3A 446 20.43 2pz0A 252 21.71 3cokA 278 23.63 1r8kA 329 23.94 c.77.1.3 97240 2clbA 188 23.99 2pgfA 371 24.47 2dx6A 159 28.41 1zjjA 263 29.91 2c6sA 523 30.16 1x9pA 523 30.33 2j51A 325 31.44 1p58A 495 31.86 i.17.1.1 94127 2pn8A 211 33.49 1m53A 570 34.03 b.71.1.1,c.1.8.1 84805,84806 2gk1B 503 34.12 c.1.8.6,d.92.2.1 135319,135320 2r6pA 390 34.23 1a04A 215 34.25 a.4.6.2,c.23.1.1 16234,31089 2d0bA 310 34.82 2bghA 421 35.32 1vp8A 201 36.22 c.49.1.2 113947 1nowA 507 36.34 c.1.8.6,d.92.2.1 85936,85937 2gzoA 195 36.48 d.310.1.1 135910 1o7aA 515 37.36 c.1.8.6,d.92.2.1 92608,92609 1z2cB 383 38.91 a.118.1.23 124377 1y791 680 41.07 1rhcA 330 41.20 c.1.16.3 97468 1p42A 270 44.80 d.14.1.7,d.14.1.7 87754,87755 1fkxA 349 45.51 c.1.9.1 29018 1goxA 369 45.80 c.1.4.1 28607 2j65A 271 46.18 d.14.1.7,d.14.1.7 138074,138075 1fkwA 349 46.60 c.1.9.1 29019 2pigA 334 46.72 1al8A 359 46.82 c.1.4.1 28608 2dqwA 294 46.86 1gylA 369 47.19 c.1.4.1 28610 1wdnA 226 47.28 c.94.1.1 35816 2jt2A 274 47.62 2cdh0 226 48.27 1a4mA 349 48.62 c.1.9.1 29014 2ogjA 417 49.55 2adaA 352 50.26 c.1.9.1 29027 2qtqA 213 50.28 1uioA 349 50.80 c.1.9.1 29021 1xxeA 282 51.94 d.14.1.7,d.14.1.7 116157,116158 2imiA 221 51.95 1vflA 356 53.81 c.1.9.1 120041 2go3A 267 53.96 d.14.1.7,d.14.1.7 135422,135423 2z0xA 158 55.71 1j32A 388 57.02 c.67.1.1 77067 1w8sA 263 59.20 c.1.10.1 120744 1ojxA 263 60.43 c.1.10.1 93164 5bj4A 385 62.12 c.67.1.1 100875 1k20A 310 63.63 c.107.1.1 68027 2guiA 194 64.55 c.55.3.5 135737 1m5wA 243 64.62 c.1.24.1 84836 5bj3A 385 64.95 c.67.1.1 100871 1uipA 349 65.78 c.1.9.1 29022 1w8rA 263 65.90 c.1.10.1 120734 1ho1A 242 66.17 c.1.24.1 61097 2gm2A 132 66.87 1zgdA 312 67.18 2bgnE 363 67.76 c.1.9.1 128492 2qa2A 499 68.24 1qxlA 356 69.71 c.1.9.1 104644 1b5oA 385 70.11 c.67.1.1 90401 1w1iE 357 70.38 c.1.9.1 109051 2pp0A 398 70.89 1bjwA 382 72.25 c.67.1.1 34349 1frbA 315 72.62 c.1.7.1 28665 1rypG 244 73.12 d.153.1.4 41938 1bkgA 385 74.01 c.67.1.1 34351 1b5pA 385 74.01 c.67.1.1 90403 1jndA 420 74.26 c.1.8.5,d.26.3.1 71757,71758 1xm7A 195 75.01 d.159.1.8 115473 1dv2A 452 79.63 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2pp3A 398 79.95 1dv1A 449 80.99 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1g0uF 248 82.85 d.153.1.4 41951 1j54A 186 84.13 c.55.3.5 77077 1n7kA 234 89.43 c.1.10.1 85374