# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.36e-17 1m65A 245 1.16e-12 c.6.3.1 84847 2anuA 255 3.22e-09 c.6.3.1 127058 2hnhA 910 1.17e-06 2p1jA 186 0.07798 1v77A 212 0.2658 c.6.3.2 108402 1wljA 189 0.4380 c.55.3.5 114734 1j9aA 184 1.604 c.55.3.5 84135 1j53A 186 1.812 c.55.3.5 77076 1ezwA 349 2.416 c.1.16.3 29558 2ob3A 330 2.431 1yw1A 442 2.882 c.1.16.4 124130 2guiA 194 3.370 c.55.3.5 135737 1j54A 186 3.483 c.55.3.5 77077 1ytaA 180 3.725 c.55.3.5 124002 1qtwA 285 3.855 c.1.15.1 29392 2igiA 180 3.940 2q02A 272 4.294 3b9oA 440 4.737 1zuaX 317 4.946 1yx1A 264 5.149 c.1.15.7 124169 2qw5A 335 5.485 1w0hA 204 5.887 c.55.3.5 114064 2f96A 224 7.210 c.55.3.5 133153 1w1iE 357 7.255 c.1.9.1 109051 1y97A 238 7.577 c.55.3.5 122773 2hk0A 309 9.630 2ao0A 324 11.13 1i0dA 332 11.26 c.1.9.3 61487 1a4mA 349 11.65 c.1.9.1 29014 1ojxA 263 12.05 c.1.10.1 93164 2agtA 319 12.34 1hw6A 278 12.51 c.1.7.1 61296 1fkx 349 12.54 1tvlA 454 12.55 c.1.16.4 107366 1zgdA 312 13.48 3bofA 566 14.40 2gzxA 265 14.90 1y0eA 223 15.69 c.1.2.5 116297 1mi3A 322 16.14 c.1.7.1 91274 2bp1A 360 16.66 2qxfA 482 16.86 1vbjA 281 17.55 2ac7A 235 17.72 c.56.2.1 126543 1yxyA 234 19.16 c.1.2.5 124203 1jq5A 370 19.18 e.22.1.2 67084 2i7gA 376 19.66 2ffiA 288 20.60 c.1.9.15 133385 2dskA 311 20.72 2qahA 303 21.11 1fxoA 293 21.64 c.68.1.6 34524 1f07A 321 22.26 c.1.16.3 59560 3cnyA 301 22.47 2amxA 376 23.52 c.1.9.1 127024 2f6kA 307 24.31 c.1.9.15 133047 1lucB 324 24.52 c.1.16.1 29548 2d2jA 329 25.11 c.1.9.3 131175 3c86A 328 25.20 1w8sA 263 26.32 c.1.10.1 120744 2g0wA 296 26.47 c.1.15.4 134503 1lvwA 295 26.52 c.68.1.6 84723 1gveA 327 26.59 c.1.7.1 70597 1i60A 278 26.61 c.1.15.4 71118 2vc7A 314 26.66 1xwyA 264 27.18 c.1.9.12 122411 2pgfA 371 27.27 2oa8A 233 27.27 3xis 387 30.13 1ads 315 30.78 1o0yA 260 31.94 c.1.10.1 80756 1ynpA 317 32.02 2ahrA 259 32.62 a.100.1.10,c.2.1.6 126775,126776 2qulA 290 32.77 1xrtA 467 33.08 b.92.1.3,c.1.9.6 122258,122259 1frb 315 34.32 1us0A 316 36.72 c.1.7.1 99850 1korA 400 37.61 c.26.2.1,d.210.1.1 72824,72825 1vl2A 421 38.30 c.26.2.1,d.210.1.1 108708,108709 1rxyA 253 38.33 c.56.2.1 98065 1lucA 355 38.41 c.1.16.1 29547 2j6vA 301 39.39 1tv8A 340 41.34 c.1.28.3 107352 1bf6A 291 41.39 c.1.9.3 29065 1vicA 262 41.59 c.68.1.13 100756 3c8nA 356 41.78 1kq3A 376 42.54 e.22.1.2 68790 1bqcA 302 43.75 c.1.8.3 28831 2nqlA 388 45.14 1qh5A 260 45.69 d.157.1.2 42057 1ede 310 45.80 1qisA 396 46.71 c.67.1.1 34284 1w8gA 234 47.47 2fb2A 340 47.51 1qrrA 394 47.84 c.2.1.2 29824 2gokA 429 48.63 1pszA 303 50.37 c.92.2.2 35600 1yixA 265 50.98 c.1.9.12 123371 2hejA 323 51.44 1k77A 260 51.93 c.1.15.5 72096 1qjcA 158 54.21 c.26.1.3 63328 1qwkA 317 54.47 c.1.7.1 96482 2ehhA 294 55.36 1rhcA 330 55.62 c.1.16.3 97468 1fobA 334 55.88 c.1.8.3 83255 2z06A 252 56.09 1gkrA 458 56.30 b.92.1.3,c.1.9.6 70251,70252 1tzfA 259 56.67 c.68.1.13 107476 1qfeA 252 57.64 c.1.10.1 29167 2pcqA 283 58.24 1gqnA 252 59.11 c.1.10.1 90514 1vflA 356 59.85 c.1.9.1 120041 1rkxA 357 60.30 c.2.1.2 97631 1vlwA 217 61.22 c.1.10.1 108868 1vpqA 273 62.37 c.1.32.1 113974 1zsxA 347 62.37 2d59A 144 62.78 c.2.1.8 131266 1h5yA 253 63.59 c.1.2.1 65638 1o5kA 306 64.03 c.1.10.1 92504 2dztA 248 64.20 1i1wA 303 65.30 c.1.8.3 76732 1r0kA 388 65.68 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2i1qA 322 66.33 a.60.4.1,c.37.1.11 136984,136985 1j96A 323 66.74 c.1.7.1 71616 2yx0A 342 67.97 1bn7A 294 68.34 c.69.1.8 34677 2tpsA 227 69.06 c.1.3.1 28591 1n82A 331 69.58 c.1.8.3 91703 1gg4A 452 70.09 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1g57A 217 70.54 d.115.1.2 60253 1yc5A 246 71.14 c.31.1.5 122910 1ars 396 71.50 1zt2B 212 71.57 a.262.1.1 125625 1mp4A 292 72.09 c.68.1.6 79376 4xis 387 75.00 1zosA 230 75.48 2b81A 323 75.81 1v93A 296 77.25 c.1.23.1 100532 1iugA 352 79.22 c.67.1.3 90699 1qf9A 194 79.58 c.37.1.1 31848 1geqA 248 79.69 c.1.2.4 28589 1qopA 268 79.86 c.1.2.4 28570 1s1pA 331 80.87 c.1.7.1 98350 2aioA 269 82.62 d.157.1.1 126829 1snnA 227 84.06 d.115.1.2 105821 1jvsA 400 84.89 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1w5tA 412 85.34 a.4.5.11,c.37.1.20 114255,114256 1vhwA 253 85.74 c.56.2.1 100706 1gl6A 436 86.01 c.37.1.11 70259 1je0A 236 87.23 c.56.2.1 66581 2egzA 219 88.24 1kcxA 518 88.43 b.92.1.3,c.1.9.6 90953,90954