# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.52e-18 1m65A 245 8.99e-13 c.6.3.1 84847 2anuA 255 1.46e-09 c.6.3.1 127058 2hnhA 910 1.33e-06 2p1jA 186 0.07031 1wljA 189 0.4516 c.55.3.5 114734 1v77A 212 0.8409 c.6.3.2 108402 1j9aA 184 0.9702 c.55.3.5 84135 1j53A 186 1.475 c.55.3.5 77076 1ytaA 180 1.824 c.55.3.5 124002 2igiA 180 2.067 1yw1A 442 2.526 c.1.16.4 124130 1j54A 186 2.601 c.55.3.5 77077 2guiA 194 3.180 c.55.3.5 135737 1ezwA 349 3.567 c.1.16.3 29558 1w0hA 204 3.859 c.55.3.5 114064 2ob3A 330 4.114 1yx1A 264 4.589 c.1.15.7 124169 1zuaX 317 4.663 1qtwA 285 4.964 c.1.15.1 29392 1tvlA 454 6.460 c.1.16.4 107366 2f96A 224 6.758 c.55.3.5 133153 1y97A 238 6.925 c.55.3.5 122773 2qw5A 335 7.580 1w1iE 357 7.787 c.1.9.1 109051 2qxfA 482 7.803 2f6kA 307 9.129 c.1.9.15 133047 3b9oA 440 9.163 2hk0A 309 9.442 2gzxA 265 9.617 2q02A 272 10.10 2agtA 319 11.63 2i7gA 376 12.99 1i0dA 332 13.53 c.1.9.3 61487 1a4mA 349 13.93 c.1.9.1 29014 2qahA 303 14.84 1y0eA 223 16.26 c.1.2.5 116297 1zgdA 312 17.32 1ojxA 263 17.48 c.1.10.1 93164 1fxoA 293 18.17 c.68.1.6 34524 1o0yA 260 18.94 c.1.10.1 80756 2oa8A 233 20.02 1hw6A 278 20.90 c.1.7.1 61296 1lucB 324 20.94 c.1.16.1 29548 1fkx 349 23.26 1yxyA 234 23.71 c.1.2.5 124203 1xrtA 467 24.11 b.92.1.3,c.1.9.6 122258,122259 2dskA 311 26.02 1ads 315 28.28 1jq5A 370 28.56 e.22.1.2 67084 1frb 315 28.85 1w8sA 263 29.54 c.1.10.1 120744 2fb2A 340 29.99 1mi3A 322 30.69 c.1.7.1 91274 3buvA 326 31.12 2bp1A 360 31.38 2ao0A 324 31.43 1f07A 321 31.61 c.1.16.3 59560 2amxA 376 31.84 c.1.9.1 127024 2gokA 429 32.66 1qisA 396 32.97 c.67.1.1 34284 1r0kA 388 33.90 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 3c8nA 356 33.92 2ac7A 235 34.09 c.56.2.1 126543 1vbjA 281 34.49 1korA 400 36.04 c.26.2.1,d.210.1.1 72824,72825 1lvwA 295 36.73 c.68.1.6 84723 2yx0A 342 36.76 1k77A 260 37.85 c.1.15.5 72096 2qulA 290 37.98 2ffiA 288 38.87 c.1.9.15 133385 2j6vA 301 38.96 1kq3A 376 39.07 e.22.1.2 68790 1gkrA 458 41.13 b.92.1.3,c.1.9.6 70251,70252 1us0A 316 41.89 c.1.7.1 99850 1lucA 355 42.03 c.1.16.1 29547 1bqcA 302 42.86 c.1.8.3 28831 1qh5A 260 43.54 d.157.1.2 42057 1vicA 262 43.88 c.68.1.13 100756 3xis 387 44.09 2bgsA 344 45.14 3cnyA 301 45.40 1bf6A 291 45.81 c.1.9.3 29065 2d2jA 329 46.16 c.1.9.3 131175 2pgfA 371 46.81 1v93A 296 47.02 c.1.23.1 100532 1vflA 356 48.27 c.1.9.1 120041 1vpqA 273 49.25 c.1.32.1 113974 2hejA 323 49.74 1tzfA 259 50.44 c.68.1.13 107476 1tv8A 340 51.14 c.1.28.3 107352 1vl2A 421 51.22 c.26.2.1,d.210.1.1 108708,108709 2ahrA 259 51.40 a.100.1.10,c.2.1.6 126775,126776 1jvsA 400 51.48 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1fobA 334 52.18 c.1.8.3 83255 3bofA 566 52.58 2d59A 144 55.61 c.2.1.8 131266 1zzwA 149 55.67 1rhcA 330 55.90 c.1.16.3 97468 3c86A 328 55.94 3cjpA 272 56.80 2vc7A 314 57.40 1j96A 323 59.84 c.1.7.1 71616 1kcxA 518 60.01 b.92.1.3,c.1.9.6 90953,90954 1rzuA 485 61.35 c.87.1.8 105140 1vcvA 226 61.86 c.1.10.1 119988 2r0bA 154 61.89 1gveA 327 62.61 c.1.7.1 70597 1i60A 278 62.98 c.1.15.4 71118 1rxyA 253 64.01 c.56.2.1 98065 1zosA 230 64.52 1qf9A 194 64.52 c.37.1.1 31848 1ede 310 65.71 2g0wA 296 68.40 c.1.15.4 134503 1k47A 337 68.89 d.14.1.5,d.58.26.4 72040,72041 1o5kA 306 70.39 c.1.10.1 92504 1gqnA 252 71.39 c.1.10.1 90514 1qjcA 158 71.73 c.26.1.3 63328 1qopA 268 71.76 c.1.2.4 28570 1ynpA 317 72.80 1xwyA 264 73.17 c.1.9.12 122411 1qfeA 252 73.20 c.1.10.1 29167 1nqkA 381 74.50 c.1.16.4 92050 2pcqA 283 74.77 1pszA 303 74.93 c.92.2.2 35600 2ftwA 521 75.00 b.92.1.3,c.1.9.6 134083,134084 1mh1A 186 75.12 c.37.1.8 32002 1mp4A 292 75.93 c.68.1.6 79376 1gpjA 404 76.86 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2f4dA 184 77.69 2depA 356 81.35 1f6yA 262 83.47 c.1.21.2 29673 1s1pA 331 83.93 c.1.7.1 98350 1n82A 331 85.20 c.1.8.3 91703 2fwmX 250 85.34 2ehhA 294 87.64 1tlfA 301 88.22 c.93.1.1 35687 1gg4A 452 88.26 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986