# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.71e-17 1m65A 245 1.18e-11 c.6.3.1 84847 2anuA 255 5.29e-09 c.6.3.1 127058 2hnhA 910 2.83e-06 2p1jA 186 0.1826 1j9aA 184 0.5867 c.55.3.5 84135 1yw1A 442 1.160 c.1.16.4 124130 1v77A 212 1.274 c.6.3.2 108402 1wljA 189 1.275 c.55.3.5 114734 2ob3A 330 1.895 1ezwA 349 2.076 c.1.16.3 29558 2igiA 180 2.745 3b9oA 440 3.039 1ytaA 180 3.086 c.55.3.5 124002 2i7gA 376 3.948 1j53A 186 4.254 c.55.3.5 77076 1tvlA 454 4.378 c.1.16.4 107366 1qtwA 285 4.643 c.1.15.1 29392 2q02A 272 4.986 1fkx 349 6.051 1yx1A 264 6.216 c.1.15.7 124169 1j54A 186 6.639 c.55.3.5 77077 2f96A 224 6.862 c.55.3.5 133153 1w0hA 204 7.206 c.55.3.5 114064 1w1iE 357 8.542 c.1.9.1 109051 2guiA 194 8.747 c.55.3.5 135737 1y97A 238 8.861 c.55.3.5 122773 2d2jA 329 9.744 c.1.9.3 131175 2vc7A 314 9.925 2agtA 319 9.98 1i0dA 332 10.17 c.1.9.3 61487 1lucA 355 10.85 c.1.16.1 29547 1bf6A 291 11.90 c.1.9.3 29065 1f07A 321 12.57 c.1.16.3 59560 2ao0A 324 12.77 1zuaX 317 13.04 2amxA 376 13.12 c.1.9.1 127024 3c86A 328 14.77 1vbjA 281 15.02 1vicA 262 15.04 c.68.1.13 100756 2qw5A 335 15.07 3c8nA 356 15.39 1k77A 260 16.08 c.1.15.5 72096 1zgdA 312 16.38 2j6vA 301 17.86 2bp1A 360 18.88 1v93A 296 19.10 c.1.23.1 100532 1lucB 324 19.24 c.1.16.1 29548 2hk0A 309 21.03 1a4mA 349 23.09 c.1.9.1 29014 1hw6A 278 23.52 c.1.7.1 61296 1w8sA 263 23.52 c.1.10.1 120744 1rhcA 330 24.04 c.1.16.3 97468 1xwyA 264 24.71 c.1.9.12 122411 1o5kA 306 25.63 c.1.10.1 92504 1gvfA 286 25.74 c.1.10.2 70599 2gzxA 265 26.15 1y0eA 223 26.19 c.1.2.5 116297 2f6kA 307 26.32 c.1.9.15 133047 1nqkA 381 26.68 c.1.16.4 92050 2f06A 144 27.13 d.58.18.11,d.58.18.11 132652,132653 1rrmA 386 27.45 e.22.1.2 105081 1ads 315 28.53 1us0A 316 28.76 c.1.7.1 99850 1jq5A 370 29.17 e.22.1.2 67084 1zsxA 347 29.20 1zzmA 259 30.16 c.1.9.12 125911 3xis 387 30.31 2ffiA 288 31.28 c.1.9.15 133385 1ojxA 263 32.46 c.1.10.1 93164 2g0wA 296 32.66 c.1.15.4 134503 1yxyA 234 33.56 c.1.2.5 124203 1fxoA 293 34.97 c.68.1.6 34524 1vl2A 421 35.08 c.26.2.1,d.210.1.1 108708,108709 1i60A 278 35.48 c.1.15.4 71118 1o0yA 260 36.06 c.1.10.1 80756 1gveA 327 36.94 c.1.7.1 70597 2dskA 311 37.90 2ehhA 294 38.23 1qh5A 260 38.45 d.157.1.2 42057 2qahA 303 39.32 3cnyA 301 39.80 2qxfA 482 39.87 1korA 400 39.98 c.26.2.1,d.210.1.1 72824,72825 1kq3A 376 40.14 e.22.1.2 68790 2ahrA 259 41.29 a.100.1.10,c.2.1.6 126775,126776 2d59A 144 42.70 c.2.1.8 131266 2tpsA 227 42.83 c.1.3.1 28591 1vflA 356 43.93 c.1.9.1 120041 1frb 315 44.72 2ac7A 235 45.22 c.56.2.1 126543 1mi3A 322 45.30 c.1.7.1 91274 2qulA 290 45.61 1tzfA 259 45.73 c.68.1.13 107476 2jfuA 291 46.92 1yixA 265 48.29 c.1.9.12 123371 1qf9A 194 48.61 c.37.1.1 31848 2pcqA 283 48.77 2gokA 429 52.77 1qwkA 317 54.01 c.1.7.1 96482 2jg2A 422 54.17 1ynpA 317 54.93 1b5tA 275 55.45 c.1.23.1 29676 1gkrA 458 58.10 b.92.1.3,c.1.9.6 70251,70252 4xis 387 58.82 2r8wA 332 58.90 2ogyA 262 59.13 2ftwA 521 59.23 b.92.1.3,c.1.9.6 134083,134084 1f6yA 262 59.49 c.1.21.2 29673 2oa8A 233 60.28 1w5tA 412 61.62 a.4.5.11,c.37.1.20 114255,114256 1wd7A 261 62.00 c.113.1.1 114526 1xrtA 467 63.88 b.92.1.3,c.1.9.6 122258,122259 2i1qA 322 64.28 a.60.4.1,c.37.1.11 136984,136985 1n7kA 234 64.41 c.1.10.1 85374 2f4dA 184 64.70 1o2dA 371 67.23 e.22.1.2 86591 3cjpA 272 68.09 2q3hA 201 68.49 2r0bA 154 69.59 1dhpA 292 70.45 c.1.10.1 29097 1zzwA 149 72.34 1vlwA 217 73.15 c.1.10.1 108868 1lvwA 295 73.97 c.68.1.6 84723 2nu8B 388 75.83 1qopA 268 76.43 c.1.2.4 28570 2dztA 248 77.14 2qv5A 261 77.66 1vd6A 224 77.92 c.1.18.3 119991 2o1eA 312 78.50 1nal1 297 78.94 3buvA 326 79.12 2fb2A 340 79.14 1h5yA 253 80.38 c.1.2.1 65638 1kcxA 518 80.77 b.92.1.3,c.1.9.6 90953,90954 1rlzA 369 81.37 c.31.1.1 104989 2h1vA 310 81.56 1vpqA 273 83.20 c.1.32.1 113974 1vljA 407 83.42 e.22.1.2 108832 2hejA 323 86.55 2puzA 419 87.08 1mh1A 186 87.74 c.37.1.8 32002 2yx0A 342 88.31 2ac4A 309 88.58 1r0kA 388 88.68 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2h1yA 321 88.99 1j96A 323 89.94 c.1.7.1 71616