# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.77e-19 1m65A 245 1.44e-13 c.6.3.1 84847 2anuA 255 4.24e-10 c.6.3.1 127058 2hnhA 910 4.68e-07 2p1jA 186 0.05516 1v77A 212 0.1837 c.6.3.2 108402 1wljA 189 0.1848 c.55.3.5 114734 1j9aA 184 1.266 c.55.3.5 84135 2ob3A 330 1.276 1ytaA 180 1.361 c.55.3.5 124002 1yw1A 442 1.482 c.1.16.4 124130 1w0hA 204 1.535 c.55.3.5 114064 1j53A 186 2.059 c.55.3.5 77076 1ezwA 349 2.351 c.1.16.3 29558 3b9oA 440 2.381 1y97A 238 2.982 c.55.3.5 122773 2igiA 180 3.534 1j54A 186 3.755 c.55.3.5 77077 2guiA 194 3.844 c.55.3.5 135737 1qtwA 285 4.360 c.1.15.1 29392 2gzxA 265 4.529 1lucB 324 4.945 c.1.16.1 29548 2agtA 319 5.209 2f96A 224 5.259 c.55.3.5 133153 1yx1A 264 6.144 c.1.15.7 124169 1tvlA 454 6.495 c.1.16.4 107366 2qw5A 335 6.570 1i0dA 332 6.701 c.1.9.3 61487 2i7gA 376 6.724 1w1iE 357 7.100 c.1.9.1 109051 1zuaX 317 7.334 2q02A 272 7.363 2d2jA 329 7.768 c.1.9.3 131175 1lucA 355 9.97 c.1.16.1 29547 1a4mA 349 11.59 c.1.9.1 29014 2ac7A 235 13.14 c.56.2.1 126543 2qxfA 482 13.23 3bofA 566 14.24 1fkx 349 14.87 1zgdA 312 15.05 2hk0A 309 15.55 1hw6A 278 15.90 c.1.7.1 61296 1mi3A 322 16.09 c.1.7.1 91274 2yx0A 342 16.53 2vc7A 314 17.55 2ao0A 324 18.01 1ads 315 18.33 1nqkA 381 18.72 c.1.16.4 92050 3c86A 328 19.16 1bf6A 291 20.43 c.1.9.3 29065 2oa8A 233 20.71 1qh5A 260 20.95 d.157.1.2 42057 1i60A 278 21.13 c.1.15.4 71118 3c8nA 356 22.23 1jq5A 370 23.07 e.22.1.2 67084 1iugA 352 23.23 c.67.1.3 90699 1v93A 296 26.63 c.1.23.1 100532 1xwyA 264 28.94 c.1.9.12 122411 1frb 315 29.00 2f06A 144 29.37 d.58.18.11,d.58.18.11 132652,132653 1s2oA 244 29.40 c.108.1.10 118846 1f07A 321 29.51 c.1.16.3 59560 1us0A 316 29.65 c.1.7.1 99850 2nqlA 388 30.28 1rhcA 330 31.65 c.1.16.3 97468 3xis 387 32.82 1pszA 303 33.02 c.92.2.2 35600 1w8sA 263 33.45 c.1.10.1 120744 1ojxA 263 34.78 c.1.10.1 93164 1qisA 396 36.28 c.67.1.1 34284 2bp1A 360 36.45 1o0yA 260 36.51 c.1.10.1 80756 2qulA 290 36.84 1j96A 323 37.25 c.1.7.1 71616 1k77A 260 37.50 c.1.15.5 72096 2dskA 311 38.14 1korA 400 39.81 c.26.2.1,d.210.1.1 72824,72825 2z06A 252 40.87 1vbjA 281 41.48 1gg4A 452 44.57 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2hejA 323 45.75 2ffiA 288 45.77 c.1.9.15 133385 1vflA 356 46.22 c.1.9.1 120041 1lvwA 295 46.42 c.68.1.6 84723 2g0wA 296 46.94 c.1.15.4 134503 1i1wA 303 46.98 c.1.8.3 76732 1vicA 262 47.17 c.68.1.13 100756 1o5kA 306 48.81 c.1.10.1 92504 2ahrA 259 50.04 a.100.1.10,c.2.1.6 126775,126776 1fxoA 293 50.32 c.68.1.6 34524 1vl2A 421 50.63 c.26.2.1,d.210.1.1 108708,108709 2b81A 323 50.68 2amxA 376 54.36 c.1.9.1 127024 1bjwA 382 54.93 c.67.1.1 34349 1qfeA 252 55.02 c.1.10.1 29167 1gqnA 252 56.32 c.1.10.1 90514 2bgsA 344 56.60 1y0eA 223 56.65 c.1.2.5 116297 1s1pA 331 57.54 c.1.7.1 98350 1ars 396 57.93 1qf9A 194 58.33 c.37.1.1 31848 1qwkA 317 58.35 c.1.7.1 96482 1vlwA 217 58.84 c.1.10.1 108868 2pcqA 283 59.03 1ynpA 317 59.31 1bqcA 302 60.27 c.1.8.3 28831 1wd7A 261 61.29 c.113.1.1 114526 2qedA 258 61.66 1kq3A 376 61.97 e.22.1.2 68790 2gokA 429 63.28 2jfuA 291 63.86 4xis 387 64.02 1qrrA 394 65.00 c.2.1.2 29824 1b5pA 385 65.17 c.67.1.1 90403 1zsxA 347 66.47 1h4pA 408 68.42 c.1.8.3 90617 2d59A 144 68.55 c.2.1.8 131266 1tzfA 259 68.57 c.68.1.13 107476 1yc5A 246 71.69 c.31.1.5 122910 2j6vA 301 72.21 1w8gA 234 74.40 2f6kA 307 75.84 c.1.9.15 133047 3cnyA 301 76.69 1rxyA 253 78.73 c.56.2.1 98065 2fi1A 190 79.83 c.108.1.3 133508 1k47A 337 80.71 d.14.1.5,d.58.26.4 72040,72041 1zzmA 259 83.65 c.1.9.12 125911 1xzoA 174 83.67 c.47.1.10 122474 1vhwA 253 85.05 c.56.2.1 100706 1xrtA 467 85.11 b.92.1.3,c.1.9.6 122258,122259 1h5yA 253 85.45 c.1.2.1 65638 2uz0A 263 86.95 1aj2A 282 87.22 c.1.21.1 29665 2qk1A 249 88.12 1gvfA 286 88.46 c.1.10.2 70599 2jg2A 422 88.93 1gveA 327 89.63 c.1.7.1 70597