# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.70e-19 1m65A 245 1.74e-13 c.6.3.1 84847 2anuA 255 7.37e-10 c.6.3.1 127058 2hnhA 910 6.04e-07 2p1jA 186 0.05054 1v77A 212 0.1941 c.6.3.2 108402 1wljA 189 0.2217 c.55.3.5 114734 2ob3A 330 1.163 1j9aA 184 1.302 c.55.3.5 84135 1yw1A 442 1.411 c.1.16.4 124130 1ytaA 180 1.578 c.55.3.5 124002 1w0hA 204 1.679 c.55.3.5 114064 1j53A 186 1.953 c.55.3.5 77076 3b9oA 440 2.116 1y97A 238 2.580 c.55.3.5 122773 1ezwA 349 2.916 c.1.16.3 29558 2igiA 180 3.085 1qtwA 285 3.353 c.1.15.1 29392 2guiA 194 3.405 c.55.3.5 135737 1j54A 186 3.731 c.55.3.5 77077 2f96A 224 4.506 c.55.3.5 133153 2i7gA 376 4.610 1lucB 324 5.316 c.1.16.1 29548 2agtA 319 5.406 1tvlA 454 5.621 c.1.16.4 107366 2gzxA 265 6.029 2qw5A 335 6.458 1i0dA 332 7.289 c.1.9.3 61487 1zuaX 317 7.790 1yx1A 264 8.018 c.1.15.7 124169 2q02A 272 8.129 1a4mA 349 8.744 c.1.9.1 29014 2qxfA 482 9.190 1w1iE 357 9.886 c.1.9.1 109051 2d2jA 329 10.45 c.1.9.3 131175 2hk0A 309 12.56 1fkx 349 12.84 1lucA 355 13.46 c.1.16.1 29547 2ac7A 235 14.25 c.56.2.1 126543 2oa8A 233 15.56 1nqkA 381 15.56 c.1.16.4 92050 1zgdA 312 16.27 3bofA 566 16.45 2ao0A 324 16.49 3c86A 328 17.78 1hw6A 278 17.85 c.1.7.1 61296 1qh5A 260 18.66 d.157.1.2 42057 3xis 387 19.37 2vc7A 314 19.70 1s2oA 244 21.93 c.108.1.10 118846 1ads 315 22.41 1ojxA 263 22.62 c.1.10.1 93164 1mi3A 322 22.75 c.1.7.1 91274 1xwyA 264 23.78 c.1.9.12 122411 2bp1A 360 23.92 1bf6A 291 25.28 c.1.9.3 29065 2dskA 311 25.29 1iugA 352 25.35 c.67.1.3 90699 2yx0A 342 25.49 3c8nA 356 25.50 1j96A 323 26.83 c.1.7.1 71616 1lvwA 295 28.66 c.68.1.6 84723 1frb 315 29.09 1o0yA 260 29.33 c.1.10.1 80756 1i60A 278 29.51 c.1.15.4 71118 2pgfA 371 31.33 1pszA 303 32.28 c.92.2.2 35600 2nqlA 388 32.91 1k77A 260 33.30 c.1.15.5 72096 2hejA 323 34.32 1us0A 316 34.33 c.1.7.1 99850 1qisA 396 34.59 c.67.1.1 34284 1vflA 356 34.69 c.1.9.1 120041 1v93A 296 34.81 c.1.23.1 100532 1w8sA 263 34.98 c.1.10.1 120744 2ffiA 288 35.19 c.1.9.15 133385 1rhcA 330 35.79 c.1.16.3 97468 1i1wA 303 36.05 c.1.8.3 76732 1vbjA 281 37.17 2g0wA 296 37.41 c.1.15.4 134503 1f07A 321 40.74 c.1.16.3 59560 1ynpA 317 41.09 2z06A 252 41.39 2amxA 376 42.74 c.1.9.1 127024 1gg4A 452 43.18 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1ars 396 45.03 1fxoA 293 45.64 c.68.1.6 34524 2b81A 323 45.66 1vl2A 421 46.91 c.26.2.1,d.210.1.1 108708,108709 2f06A 144 46.93 d.58.18.11,d.58.18.11 132652,132653 1y0eA 223 47.06 c.1.2.5 116297 1s1pA 331 47.97 c.1.7.1 98350 2j6vA 301 48.02 1zsxA 347 48.57 2qulA 290 49.56 1korA 400 50.13 c.26.2.1,d.210.1.1 72824,72825 2ahrA 259 51.11 a.100.1.10,c.2.1.6 126775,126776 1jq5A 370 52.22 e.22.1.2 67084 4xis 387 52.55 1bjwA 382 52.57 c.67.1.1 34349 1vicA 262 53.39 c.68.1.13 100756 2qedA 258 53.74 1gvfA 286 54.35 c.1.10.2 70599 1qrrA 394 56.87 c.2.1.2 29824 1gveA 327 57.06 c.1.7.1 70597 1qwkA 317 58.41 c.1.7.1 96482 2gokA 429 58.75 1o5kA 306 60.32 c.1.10.1 92504 2pcqA 283 60.97 1wd7A 261 61.86 c.113.1.1 114526 1b5pA 385 66.12 c.67.1.1 90403 2d59A 144 66.52 c.2.1.8 131266 1gqnA 252 66.75 c.1.10.1 90514 1qfeA 252 67.06 c.1.10.1 29167 1zzmA 259 67.17 c.1.9.12 125911 2i57A 438 67.58 1w8gA 234 67.75 1vlwA 217 68.34 c.1.10.1 108868 3cnyA 301 69.08 1bqcA 302 69.19 c.1.8.3 28831 2bgsA 344 69.94 1kq3A 376 70.62 e.22.1.2 68790 2qyuA 627 71.30 1xrtA 467 71.30 b.92.1.3,c.1.9.6 122258,122259 1yc5A 246 73.18 c.31.1.5 122910 1tzfA 259 73.25 c.68.1.13 107476 2depA 356 73.73 1muwA 386 74.81 c.1.15.3 79495 1rxyA 253 77.76 c.56.2.1 98065 1tv8A 340 80.78 c.1.28.3 107352 1aj2A 282 81.34 c.1.21.1 29665 1a0dA 440 83.39 c.1.15.3 29533 1vhwA 253 83.44 c.56.2.1 100706 1h5yA 253 84.66 c.1.2.1 65638 1yixA 265 84.90 c.1.9.12 123371 1bn7A 294 85.79 c.69.1.8 34677 2qahA 303 87.82 1zbmA 280 89.80 c.94.1.1 124858