# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.44e-20 1m65A 245 2.56e-14 c.6.3.1 84847 2anuA 255 2.42e-10 c.6.3.1 127058 2hnhA 910 2.45e-07 2p1jA 186 0.04226 1v77A 212 0.1335 c.6.3.2 108402 1wljA 189 0.2192 c.55.3.5 114734 2ob3A 330 1.101 1j9aA 184 1.237 c.55.3.5 84135 1j53A 186 1.454 c.55.3.5 77076 1ytaA 180 1.497 c.55.3.5 124002 1w0hA 204 2.177 c.55.3.5 114064 1yw1A 442 2.416 c.1.16.4 124130 1y97A 238 2.442 c.55.3.5 122773 1ezwA 349 2.788 c.1.16.3 29558 2guiA 194 3.062 c.55.3.5 135737 1j54A 186 3.070 c.55.3.5 77077 1qtwA 285 3.120 c.1.15.1 29392 3b9oA 440 3.506 2igiA 180 4.340 1lucB 324 4.881 c.1.16.1 29548 2i7gA 376 5.052 1i0dA 332 6.110 c.1.9.3 61487 2agtA 319 6.456 1yx1A 264 7.458 c.1.15.7 124169 2f96A 224 7.480 c.55.3.5 133153 1zuaX 317 7.920 2d2jA 329 8.353 c.1.9.3 131175 2q02A 272 8.360 2qxfA 482 9.001 2gzxA 265 9.218 2qw5A 335 10.03 1tvlA 454 10.42 c.1.16.4 107366 1a4mA 349 10.44 c.1.9.1 29014 1w1iE 357 10.45 c.1.9.1 109051 2hk0A 309 12.18 2ac7A 235 13.78 c.56.2.1 126543 2oa8A 233 14.01 1lucA 355 14.38 c.1.16.1 29547 1fkx 349 14.45 2vc7A 314 15.51 1iugA 352 16.45 c.67.1.3 90699 3bofA 566 16.71 3c86A 328 16.97 1bf6A 291 17.28 c.1.9.3 29065 2ao0A 324 17.89 3xis 387 18.09 2nqlA 388 18.19 1hw6A 278 19.28 c.1.7.1 61296 1s2oA 244 19.96 c.108.1.10 118846 1nqkA 381 20.79 c.1.16.4 92050 1qh5A 260 21.35 d.157.1.2 42057 1zgdA 312 21.39 1ojxA 263 21.54 c.1.10.1 93164 2bp1A 360 23.16 1y0eA 223 25.39 c.1.2.5 116297 2yx0A 342 26.14 1o0yA 260 26.76 c.1.10.1 80756 1qisA 396 26.93 c.67.1.1 34284 3c8nA 356 27.06 1pszA 303 27.15 c.92.2.2 35600 1mi3A 322 28.27 c.1.7.1 91274 1ads 315 28.76 1i60A 278 29.71 c.1.15.4 71118 1w8sA 263 29.94 c.1.10.1 120744 1f07A 321 32.00 c.1.16.3 59560 1rhcA 330 32.18 c.1.16.3 97468 2dskA 311 32.26 1vbjA 281 33.16 1vflA 356 33.42 c.1.9.1 120041 2ffiA 288 33.52 c.1.9.15 133385 2ahrA 259 33.60 a.100.1.10,c.2.1.6 126775,126776 1i1wA 303 34.28 c.1.8.3 76732 1fxoA 293 34.41 c.68.1.6 34524 1korA 400 34.62 c.26.2.1,d.210.1.1 72824,72825 2z06A 252 34.65 1us0A 316 36.26 c.1.7.1 99850 1lvwA 295 36.97 c.68.1.6 84723 1v93A 296 37.16 c.1.23.1 100532 1gg4A 452 37.38 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 3cnyA 301 37.46 1j96A 323 37.64 c.1.7.1 71616 2g0wA 296 38.14 c.1.15.4 134503 1k77A 260 38.42 c.1.15.5 72096 1xwyA 264 38.97 c.1.9.12 122411 1ynpA 317 39.00 2b81A 323 39.64 2hejA 323 40.34 2qulA 290 41.71 1gveA 327 42.72 c.1.7.1 70597 2pgfA 371 43.04 1vlwA 217 45.19 c.1.10.1 108868 1ars 396 47.19 1vl2A 421 49.38 c.26.2.1,d.210.1.1 108708,108709 1zsxA 347 50.05 1jq5A 370 51.50 e.22.1.2 67084 4xis 387 51.79 1o5kA 306 55.19 c.1.10.1 92504 2amxA 376 55.86 c.1.9.1 127024 1gvfA 286 55.89 c.1.10.2 70599 1vicA 262 56.08 c.68.1.13 100756 1kq3A 376 56.24 e.22.1.2 68790 2f06A 144 56.49 d.58.18.11,d.58.18.11 132652,132653 1frb 315 57.51 1qrrA 394 59.71 c.2.1.2 29824 2qedA 258 60.76 2d59A 144 61.83 c.2.1.8 131266 1yc5A 246 61.90 c.31.1.5 122910 2gokA 429 62.54 1wd7A 261 62.78 c.113.1.1 114526 1fh9A 312 64.44 c.1.8.3 28913 2j6vA 301 64.58 1xrtA 467 65.40 b.92.1.3,c.1.9.6 122258,122259 1rxyA 253 66.30 c.56.2.1 98065 1s1pA 331 66.36 c.1.7.1 98350 1bjwA 382 66.67 c.67.1.1 34349 2d69A 430 67.62 c.1.14.1,d.58.9.1 131292,131293 2bgsA 344 69.03 2qahA 303 70.11 2qyuA 627 70.55 1gqnA 252 71.85 c.1.10.1 90514 1qf9A 194 71.89 c.37.1.1 31848 2pcqA 283 72.07 2depA 356 73.44 1w8gA 234 73.94 1eg5A 384 77.23 c.67.1.3 34429 1qfeA 252 79.38 c.1.10.1 29167 1zbmA 280 80.18 c.94.1.1 124858 1tv8A 340 81.56 c.1.28.3 107352 1h5yA 253 81.72 c.1.2.1 65638 2q3hA 201 81.77 1ytw 306 82.13 1b5pA 385 82.55 c.67.1.1 90403 1bqcA 302 83.44 c.1.8.3 28831 1xp3A 307 83.49 c.1.15.1 122210 1toaA 313 84.54 c.92.2.2 35598 1yixA 265 84.98 c.1.9.12 123371 1qopA 268 85.64 c.1.2.4 28570 2fb2A 340 89.35 2agkA 260 89.78