# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.36e-17 1m65A 245 8.74e-12 c.6.3.1 84847 2anuA 255 3.72e-09 c.6.3.1 127058 2hnhA 910 4.16e-06 2p1jA 186 0.1205 1v77A 212 0.6729 c.6.3.2 108402 1j9aA 184 0.9390 c.55.3.5 84135 1wljA 189 1.053 c.55.3.5 114734 1ytaA 180 2.296 c.55.3.5 124002 1qtwA 285 3.045 c.1.15.1 29392 2qw5A 335 3.153 2igiA 180 3.271 1yw1A 442 3.388 c.1.16.4 124130 2bp1A 360 4.435 1tvlA 454 4.906 c.1.16.4 107366 3b9oA 440 5.463 1j54A 186 5.707 c.55.3.5 77077 1gg4A 452 6.264 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1gveA 327 6.536 c.1.7.1 70597 2i7gA 376 6.572 1zuaX 317 6.636 2pgfA 371 6.730 1j53A 186 6.958 c.55.3.5 77076 1zsxA 347 7.323 2guiA 194 8.121 c.55.3.5 135737 1zzmA 259 8.611 c.1.9.12 125911 2agtA 319 8.814 1w0hA 204 9.530 c.55.3.5 114064 1hw6A 278 10.33 c.1.7.1 61296 2f96A 224 10.48 c.55.3.5 133153 3bofA 566 11.22 1ezwA 349 11.22 c.1.16.3 29558 3cnyA 301 11.23 1a4mA 349 11.54 c.1.9.1 29014 2bgsA 344 11.79 1y97A 238 12.19 c.55.3.5 122773 2q02A 272 12.58 2ob3A 330 12.98 1yx1A 264 14.39 c.1.15.7 124169 1zgdA 312 14.43 1frb 315 15.31 3buvA 326 16.96 2gzxA 265 17.16 2oa8A 233 18.49 3cjpA 272 18.50 3xis 387 18.56 2yx0A 342 19.53 1y0eA 223 19.72 c.1.2.5 116297 2c1iA 431 19.92 c.6.2.3,d.341.1.1 129636,129637 1fkx 349 21.28 2qulA 290 22.25 1i1wA 303 23.73 c.1.8.3 76732 1o0yA 260 24.15 c.1.10.1 80756 1lucB 324 24.26 c.1.16.1 29548 1w8sA 263 24.98 c.1.10.1 120744 1i60A 278 25.02 c.1.15.4 71118 2g0wA 296 25.14 c.1.15.4 134503 2d2jA 329 26.36 c.1.9.3 131175 1mi3A 322 27.83 c.1.7.1 91274 2agkA 260 28.29 1nqkA 381 28.35 c.1.16.4 92050 2amxA 376 29.47 c.1.9.1 127024 1xwyA 264 29.94 c.1.9.12 122411 1qgoA 264 30.37 c.92.1.2 35596 1ynpA 317 31.77 1k77A 260 31.96 c.1.15.5 72096 1q7zA 566 32.11 c.1.21.2,c.1.26.1 96090,96091 1i0dA 332 32.93 c.1.9.3 61487 1xp3A 307 33.64 c.1.15.1 122210 1n82A 331 33.73 c.1.8.3 91703 2vc7A 314 34.30 1vbjA 281 34.71 1h5yA 253 34.77 c.1.2.1 65638 2oi2A 292 34.78 2gshA 414 35.37 2ao0A 324 35.71 1lucA 355 35.78 c.1.16.1 29547 1ads 315 36.30 2d59A 144 38.39 c.2.1.8 131266 2hejA 323 38.97 1vflA 356 40.06 c.1.9.1 120041 1o5kA 306 40.44 c.1.10.1 92504 1ra0A 430 40.47 b.92.1.2,c.1.9.5 111756,111757 5reqA 727 42.20 c.1.19.1,c.23.6.1 29632,31259 2dztA 248 42.42 2i1qA 322 42.77 a.60.4.1,c.37.1.11 136984,136985 1yc5A 246 43.49 c.31.1.5 122910 1ojxA 263 44.00 c.1.10.1 93164 1kvkA 395 44.74 d.14.1.5,d.58.26.3 73060,73061 1vhrA 184 45.72 c.45.1.1 32651 2gokA 429 47.06 1yixA 265 47.59 c.1.9.12 123371 1exbA 332 47.83 c.1.7.1 28666 1v93A 296 48.19 c.1.23.1 100532 1ur3M 319 48.34 c.1.7.1 99806 3c8nA 356 48.85 3c86A 328 49.37 1w1iE 357 49.41 c.1.9.1 109051 1n7kA 234 51.01 c.1.10.1 85374 2dskA 311 51.91 2ffiA 288 53.31 c.1.9.15 133385 1k47A 337 55.67 d.14.1.5,d.58.26.4 72040,72041 1us0A 316 56.93 c.1.7.1 99850 1bf6A 291 57.01 c.1.9.3 29065 2f5xA 312 58.18 1ars 396 58.44 1nofA 383 58.82 b.71.1.2,c.1.8.3 92020,92021 2gs8A 317 59.02 2hk0A 309 60.32 2ac7A 235 61.19 c.56.2.1 126543 2a2cA 478 62.07 1qwkA 317 62.37 c.1.7.1 96482 2puzA 419 62.51 1muwA 386 64.08 c.1.15.3 79495 2qxfA 482 64.92 2ho4A 259 65.75 1zzwA 149 66.59 2hfsA 332 66.62 1gkpA 458 68.45 b.92.1.3,c.1.9.6 70231,70232 2f06A 144 69.42 d.58.18.11,d.58.18.11 132652,132653 2j6vA 301 69.69 1vjzA 341 69.80 c.1.8.3 100838 2b81A 323 69.91 2dvtA 327 71.07 c.1.9.15 131793 1f6yA 262 71.27 c.1.21.2 29673 1bjnA 360 71.42 c.67.1.4 34469 1s1pA 331 72.67 c.1.7.1 98350 2e7fA 262 74.10 1qisA 396 75.10 c.67.1.1 34284 2dgmA 466 75.23 c.67.1.6 131508 2d69A 430 75.99 c.1.14.1,d.58.9.1 131292,131293 1s2oA 244 76.48 c.108.1.10 118846 1v0lA 313 76.57 c.1.8.3 108207 2c1gA 431 76.65 c.6.2.3,d.341.1.1 129632,129633 1nytA 271 77.31 c.2.1.7,c.58.1.5 86417,86418 1xyzA 347 77.94 c.1.8.3 28804 1j96A 323 78.07 c.1.7.1 71616 1geqA 248 78.70 c.1.2.4 28589 2r0bA 154 78.75 1g57A 217 80.47 d.115.1.2 60253 1tv8A 340 80.84 c.1.28.3 107352 1r85A 379 82.17 c.1.8.3 104839 2q8xA 331 83.44 2g3fA 421 85.40 4xis 387 85.53 2jg2A 422 85.58 2dfaA 250 85.71 c.6.2.5 131469 1ahxA 396 86.65 c.67.1.1 34293 1uuqA 440 86.68 c.1.8.3 100015 2esbA 188 87.52 1gqnA 252 88.03 c.1.10.1 90514 2pgwA 384 88.51 1ta3B 303 88.75 c.1.8.3 106732 2f6kA 307 89.50 c.1.9.15 133047 1qopA 268 89.75 c.1.2.4 28570