# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.07e-19 1m65A 245 1.78e-13 c.6.3.1 84847 2anuA 255 6.04e-10 c.6.3.1 127058 2hnhA 910 7.25e-07 2p1jA 186 0.03052 1wljA 189 0.1822 c.55.3.5 114734 1v77A 212 0.3045 c.6.3.2 108402 1j9aA 184 0.5132 c.55.3.5 84135 1j53A 186 1.193 c.55.3.5 77076 1ytaA 180 1.276 c.55.3.5 124002 2igiA 180 1.855 1j54A 186 1.859 c.55.3.5 77077 2ob3A 330 2.218 2guiA 194 2.436 c.55.3.5 135737 1w0hA 204 2.448 c.55.3.5 114064 1y97A 238 2.836 c.55.3.5 122773 1yw1A 442 3.290 c.1.16.4 124130 2f96A 224 4.379 c.55.3.5 133153 1ezwA 349 4.941 c.1.16.3 29558 2qw5A 335 5.336 3b9oA 440 5.349 1yx1A 264 5.388 c.1.15.7 124169 1qtwA 285 6.071 c.1.15.1 29392 3bofA 566 6.289 2gzxA 265 6.884 1zuaX 317 7.913 1y0eA 223 8.090 c.1.2.5 116297 2q02A 272 8.146 1jq5A 370 11.19 e.22.1.2 67084 2qxfA 482 12.59 2f06A 144 13.17 d.58.18.11,d.58.18.11 132652,132653 1i0dA 332 13.21 c.1.9.3 61487 1hw6A 278 13.50 c.1.7.1 61296 2hk0A 309 13.65 2oa8A 233 14.71 1w1iE 357 14.78 c.1.9.1 109051 1tvlA 454 15.20 c.1.16.4 107366 1w8sA 263 16.48 c.1.10.1 120744 1fkx 349 16.78 2ao0A 324 16.82 2d2jA 329 17.66 c.1.9.3 131175 1fxoA 293 17.74 c.68.1.6 34524 1ojxA 263 18.37 c.1.10.1 93164 3c86A 328 19.23 1a4mA 349 19.62 c.1.9.1 29014 1vbjA 281 19.76 1xwyA 264 21.35 c.1.9.12 122411 2yx0A 342 21.43 2amxA 376 23.58 c.1.9.1 127024 2vc7A 314 24.16 2agtA 319 25.15 1o5kA 306 25.37 c.1.10.1 92504 2f6kA 307 25.54 c.1.9.15 133047 1zzmA 259 26.25 c.1.9.12 125911 3cnyA 301 26.38 1xrtA 467 27.03 b.92.1.3,c.1.9.6 122258,122259 1zgdA 312 27.47 1o0yA 260 27.95 c.1.10.1 80756 1yxyA 234 29.27 c.1.2.5 124203 2qulA 290 29.66 1lucB 324 30.19 c.1.16.1 29548 1mi3A 322 30.37 c.1.7.1 91274 1lvwA 295 30.60 c.68.1.6 84723 1tv8A 340 31.00 c.1.28.3 107352 2ffiA 288 31.38 c.1.9.15 133385 1v93A 296 31.46 c.1.23.1 100532 1i60A 278 31.94 c.1.15.4 71118 2ac7A 235 32.15 c.56.2.1 126543 2ehhA 294 34.58 2dztA 248 34.81 2ahrA 259 34.83 a.100.1.10,c.2.1.6 126775,126776 1yixA 265 34.95 c.1.9.12 123371 1vflA 356 35.00 c.1.9.1 120041 2g0wA 296 35.43 c.1.15.4 134503 1vicA 262 35.48 c.68.1.13 100756 1s2oA 244 36.11 c.108.1.10 118846 1qopA 268 36.28 c.1.2.4 28570 2nqlA 388 36.79 2tpsA 227 36.90 c.1.3.1 28591 1vl2A 421 37.05 c.26.2.1,d.210.1.1 108708,108709 1bf6A 291 40.67 c.1.9.3 29065 1qf9A 194 42.48 c.37.1.1 31848 2dskA 311 42.53 2j6vA 301 42.88 1kq3A 376 43.77 e.22.1.2 68790 1qisA 396 44.25 c.67.1.1 34284 2pgfA 371 45.13 3xis 387 45.26 2gokA 429 45.53 1lucA 355 45.88 c.1.16.1 29547 1k77A 260 47.54 c.1.15.5 72096 1yc5A 246 47.91 c.31.1.5 122910 1ads 315 48.36 2i57A 438 48.82 2i7gA 376 48.89 2qahA 303 49.43 2i1qA 322 50.79 a.60.4.1,c.37.1.11 136984,136985 1korA 400 51.13 c.26.2.1,d.210.1.1 72824,72825 1f07A 321 52.17 c.1.16.3 59560 1vpqA 273 52.42 c.1.32.1 113974 1snnA 227 55.71 d.115.1.2 105821 1dqsA 393 57.08 e.22.1.1 43347 2ftwA 521 59.85 b.92.1.3,c.1.9.6 134083,134084 2jg2A 422 60.82 1us0A 316 62.16 c.1.7.1 99850 1ynpA 317 64.27 2r8wA 332 66.31 1wd7A 261 67.34 c.113.1.1 114526 2hejA 323 67.95 2bp1A 360 68.08 1geqA 248 69.77 c.1.2.4 28589 2pcqA 283 69.84 1qjcA 158 70.22 c.26.1.3 63328 1i1wA 303 71.51 c.1.8.3 76732 1h5yA 253 72.10 c.1.2.1 65638 1pszA 303 72.74 c.92.2.2 35600 1r0kA 388 73.02 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1tzfA 259 73.09 c.68.1.13 107476 1yumA 242 73.29 1rxyA 253 74.15 c.56.2.1 98065 1o2dA 371 74.30 e.22.1.2 86591 1gqnA 252 74.39 c.1.10.1 90514 1f6yA 262 74.84 c.1.21.2 29673 1qfeA 252 75.09 c.1.10.1 29167 1nuuA 252 75.16 c.26.1.3 86209 1gvfA 286 75.17 c.1.10.2 70599 1o12A 376 76.01 b.92.1.5,c.1.9.10 80758,80759 1rrmA 386 76.05 e.22.1.2 105081 2agkA 260 79.36 1qrrA 394 80.85 c.2.1.2 29824 1toaA 313 81.35 c.92.2.2 35598 1rd5A 262 81.76 c.1.2.4 111772 3c8nA 356 83.36 1rkxA 357 83.70 c.2.1.2 97631 1x9iA 302 84.66 c.80.1.1 114997 1jvsA 400 84.91 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1vd6A 224 85.42 c.1.18.3 119991 1j96A 323 89.73 c.1.7.1 71616