# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.35e-16 1m65A 245 2.42e-11 c.6.3.1 84847 2anuA 255 3.53e-08 c.6.3.1 127058 2hnhA 910 0.000852 2p1jA 186 0.1584 1v77A 212 0.7654 c.6.3.2 108402 1wljA 189 0.7940 c.55.3.5 114734 3bofA 566 2.004 1j9aA 184 2.180 c.55.3.5 84135 2vccA 891 2.359 1ytaA 180 4.359 c.55.3.5 124002 2qw5A 335 4.710 1j53A 186 5.058 c.55.3.5 77076 1y97A 238 5.847 c.55.3.5 122773 1ezwA 349 6.570 c.1.16.3 29558 2igiA 180 7.010 1j54A 186 7.419 c.55.3.5 77077 1xwyA 264 7.891 c.1.9.12 122411 2guiA 194 8.734 c.55.3.5 135737 1w0hA 204 8.925 c.55.3.5 114064 2f96A 224 9.772 c.55.3.5 133153 1yx1A 264 10.86 c.1.15.7 124169 2p9bA 458 12.32 1zuaX 317 13.55 2qxfA 482 13.93 2ffiA 288 14.30 c.1.9.15 133385 1o0yA 260 16.20 c.1.10.1 80756 2gzxA 265 16.41 1yaaA 412 17.38 c.67.1.1 34280 1r0kA 388 19.31 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2obeA 932 19.56 1ile 821 19.93 1hw6A 278 20.33 c.1.7.1 61296 3bi1A 709 20.91 1h4pA 408 22.64 c.1.8.3 90617 2z1aA 552 23.48 2f6kA 307 24.58 c.1.9.15 133047 2ao0A 324 25.35 1w8sA 263 27.70 c.1.10.1 120744 1a4mA 349 28.15 c.1.9.1 29014 1gsoA 431 28.50 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2oa8A 233 28.52 1ozhA 566 30.00 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2tpsA 227 32.95 c.1.3.1 28591 1vbjA 281 33.78 2q02A 272 33.99 1fkx 349 34.01 3bgaA 1010 34.43 1s2oA 244 36.07 c.108.1.10 118846 3b9oA 440 36.13 2vc7A 314 36.35 2gokA 429 36.77 2b81A 323 37.12 1yixA 265 37.35 c.1.9.12 123371 2z06A 252 39.24 2ac7A 235 40.70 c.56.2.1 126543 1xdwA 331 41.33 2qulA 290 41.95 1w1iE 357 42.01 c.1.9.1 109051 1ojxA 263 42.53 c.1.10.1 93164 1tv8A 340 42.62 c.1.28.3 107352 1yxyA 234 46.89 c.1.2.5 124203 1lucA 355 48.48 c.1.16.1 29547 2ahrA 259 49.45 a.100.1.10,c.2.1.6 126775,126776 1zzmA 259 49.90 c.1.9.12 125911 2ehhA 294 50.05 3xis 387 50.29 2amxA 376 52.06 c.1.9.1 127024 1o5kA 306 52.30 c.1.10.1 92504 1korA 400 53.21 c.26.2.1,d.210.1.1 72824,72825 1ynpA 317 53.99 2zg5A 397 54.37 1pszA 303 54.93 c.92.2.2 35600 1vflA 356 56.22 c.1.9.1 120041 2olsA 794 57.57 2j6vA 301 58.35 1bqcA 302 58.69 c.1.8.3 28831 1lucB 324 59.69 c.1.16.1 29548 1v93A 296 60.81 c.1.23.1 100532 1qisA 396 60.85 c.67.1.1 34284 1i60A 278 61.07 c.1.15.4 71118 2g0wA 296 61.72 c.1.15.4 134503 1rxyA 253 61.81 c.56.2.1 98065 2i57A 438 61.97 1vheA 373 62.23 b.49.3.1,c.56.5.4 100669,100670 1d6mA 653 64.28 e.10.1.1 43248 2d2jA 329 64.37 c.1.9.3 131175 2az4A 429 64.87 d.157.1.10 127597 2hbvA 334 66.33 c.1.9.15 136320 1kq3A 376 66.89 e.22.1.2 68790 1qf9A 194 67.49 c.37.1.1 31848 1zsxA 347 67.62 2nqlA 388 68.46 1dqsA 393 68.58 e.22.1.1 43347 1jq5A 370 68.67 e.22.1.2 67084 1bf6A 291 73.28 c.1.9.3 29065 1qopA 268 73.33 c.1.2.4 28570 2ihtA 573 74.43 1us0A 316 74.62 c.1.7.1 99850 2pmbA 462 74.69 1qtwA 285 75.49 c.1.15.1 29392 1x9iA 302 77.60 c.80.1.1 114997 1xrtA 467 78.17 b.92.1.3,c.1.9.6 122258,122259 1ho1A 242 79.03 c.1.24.1 61097 1vpqA 273 79.28 c.1.32.1 113974 1qfeA 252 79.37 c.1.10.1 29167 1gqnA 252 81.41 c.1.10.1 90514 2i1qA 322 82.51 a.60.4.1,c.37.1.11 136984,136985 1xfdA 723 84.33 b.70.3.1,c.69.1.24 115251,115252 1vjrA 271 84.63 c.108.1.14 100832 2ojpA 292 84.94 1y0eA 223 85.16 c.1.2.5 116297 2r8wA 332 86.69 2f06A 144 87.01 d.58.18.11,d.58.18.11 132652,132653 1h5yA 253 89.94 c.1.2.1 65638