# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.95e-19 1m65A 245 2.87e-13 c.6.3.1 84847 2anuA 255 8.18e-10 c.6.3.1 127058 2hnhA 910 8.47e-07 2p1jA 186 0.02777 1wljA 189 0.1687 c.55.3.5 114734 1v77A 212 0.2991 c.6.3.2 108402 1j9aA 184 0.5419 c.55.3.5 84135 2ob3A 330 1.273 1j53A 186 1.317 c.55.3.5 77076 1ytaA 180 1.365 c.55.3.5 124002 2igiA 180 1.723 1j54A 186 1.902 c.55.3.5 77077 1y97A 238 2.073 c.55.3.5 122773 1w0hA 204 2.301 c.55.3.5 114064 2guiA 194 2.418 c.55.3.5 135737 1yw1A 442 2.770 c.1.16.4 124130 1ezwA 349 4.179 c.1.16.3 29558 2f96A 224 4.234 c.55.3.5 133153 1qtwA 285 4.760 c.1.15.1 29392 3bofA 566 5.347 1yx1A 264 5.540 c.1.15.7 124169 2qw5A 335 5.841 3b9oA 440 6.299 1i0dA 332 7.120 c.1.9.3 61487 2d2jA 329 7.529 c.1.9.3 131175 2gzxA 265 7.748 1zuaX 317 7.794 1y0eA 223 8.167 c.1.2.5 116297 2q02A 272 9.742 2qxfA 482 10.08 3c86A 328 11.06 2oa8A 233 11.23 2ao0A 324 15.41 1jq5A 370 15.50 e.22.1.2 67084 1hw6A 278 15.86 c.1.7.1 61296 2hk0A 309 16.53 1a4mA 349 17.50 c.1.9.1 29014 1tvlA 454 18.06 c.1.16.4 107366 1w8sA 263 19.05 c.1.10.1 120744 1fxoA 293 19.31 c.68.1.6 34524 1fkx 349 20.07 1xwyA 264 20.56 c.1.9.12 122411 2vc7A 314 20.62 2agtA 319 20.66 2nqlA 388 21.05 1ojxA 263 21.42 c.1.10.1 93164 1zzmA 259 22.63 c.1.9.12 125911 1o0yA 260 23.02 c.1.10.1 80756 2ffiA 288 24.02 c.1.9.15 133385 1lucB 324 24.25 c.1.16.1 29548 1w1iE 357 26.81 c.1.9.1 109051 1i60A 278 26.88 c.1.15.4 71118 1zgdA 312 27.46 1mi3A 322 27.69 c.1.7.1 91274 1vflA 356 28.44 c.1.9.1 120041 2i7gA 376 28.53 1vbjA 281 28.74 2g0wA 296 28.87 c.1.15.4 134503 1qisA 396 29.38 c.67.1.1 34284 2yx0A 342 29.79 1xrtA 467 29.95 b.92.1.3,c.1.9.6 122258,122259 1vl2A 421 30.05 c.26.2.1,d.210.1.1 108708,108709 2ahrA 259 30.47 a.100.1.10,c.2.1.6 126775,126776 2f06A 144 31.04 d.58.18.11,d.58.18.11 132652,132653 2f6kA 307 31.36 c.1.9.15 133047 1yxyA 234 31.58 c.1.2.5 124203 2dskA 311 31.91 1o5kA 306 33.06 c.1.10.1 92504 1v93A 296 33.29 c.1.23.1 100532 2ac7A 235 33.67 c.56.2.1 126543 1s2oA 244 34.96 c.108.1.10 118846 1lucA 355 35.05 c.1.16.1 29547 3cnyA 301 36.56 1dqsA 393 37.07 e.22.1.1 43347 1tv8A 340 39.61 c.1.28.3 107352 1qopA 268 40.18 c.1.2.4 28570 2qulA 290 41.01 1ads 315 41.26 1qf9A 194 42.06 c.37.1.1 31848 1lvwA 295 43.61 c.68.1.6 84723 1k77A 260 44.13 c.1.15.5 72096 2dztA 248 44.99 2tpsA 227 45.03 c.1.3.1 28591 2amxA 376 45.78 c.1.9.1 127024 2pgfA 371 47.79 2ehhA 294 48.80 2j6vA 301 48.97 3xis 387 51.58 2qahA 303 52.16 1wd7A 261 52.72 c.113.1.1 114526 1r0kA 388 52.76 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1yixA 265 52.79 c.1.9.12 123371 2gokA 429 53.91 1bf6A 291 53.95 c.1.9.3 29065 1korA 400 55.12 c.26.2.1,d.210.1.1 72824,72825 1us0A 316 55.15 c.1.7.1 99850 2i57A 438 55.66 1o2dA 371 56.51 e.22.1.2 86591 1f07A 321 59.30 c.1.16.3 59560 1vpqA 273 66.06 c.1.32.1 113974 1gqnA 252 66.56 c.1.10.1 90514 2i1qA 322 66.69 a.60.4.1,c.37.1.11 136984,136985 1yc5A 246 67.12 c.31.1.5 122910 1kq3A 376 67.73 e.22.1.2 68790 1qfeA 252 68.42 c.1.10.1 29167 1vicA 262 68.88 c.68.1.13 100756 1f6yA 262 69.06 c.1.21.2 29673 1gvfA 286 69.26 c.1.10.2 70599 1gg4A 452 70.31 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1geqA 248 70.90 c.1.2.4 28589 1nqkA 381 71.06 c.1.16.4 92050 2jg2A 422 71.07 1h5yA 253 71.63 c.1.2.1 65638 2ftwA 521 74.91 b.92.1.3,c.1.9.6 134083,134084 1ars 396 75.06 2hejA 323 76.02 2pcqA 283 76.63 1w8gA 234 76.92 1qh5A 260 77.07 d.157.1.2 42057 1a53A 247 77.40 c.1.2.4 28564 1j96A 323 77.91 c.1.7.1 71616 1w3iA 293 78.12 c.1.10.1 109152 2z06A 252 78.88 1toaA 313 80.44 c.92.2.2 35598 1rxyA 253 80.52 c.56.2.1 98065 1pszA 303 80.95 c.92.2.2 35600 1ynpA 317 81.08 2r8wA 332 81.72 1j5sA 463 81.76 c.1.9.8 71580 1snnA 227 81.82 d.115.1.2 105821 1qjcA 158 82.85 c.26.1.3 63328 3c8nA 356 83.48 1frb 315 85.42 2agkA 260 85.82 1qrrA 394 88.12 c.2.1.2 29824