# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.01e-19 1m65A 245 7.13e-14 c.6.3.1 84847 2anuA 255 1.11e-10 c.6.3.1 127058 2hnhA 910 2.15e-07 2p1jA 186 0.01021 1wljA 189 0.1138 c.55.3.5 114734 1j9aA 184 0.1775 c.55.3.5 84135 1v77A 212 0.4892 c.6.3.2 108402 1w0hA 204 0.5105 c.55.3.5 114064 1j53A 186 0.5702 c.55.3.5 77076 1ytaA 180 0.7794 c.55.3.5 124002 2igiA 180 0.8221 1j54A 186 1.079 c.55.3.5 77077 2guiA 194 1.398 c.55.3.5 135737 1y97A 238 1.630 c.55.3.5 122773 1yw1A 442 2.488 c.1.16.4 124130 2f96A 224 2.808 c.55.3.5 133153 2qw5A 335 3.373 2ob3A 330 3.570 3b9oA 440 4.155 1ezwA 349 5.618 c.1.16.3 29558 1zuaX 317 5.971 2qxfA 482 6.046 1qtwA 285 7.396 c.1.15.1 29392 1yx1A 264 7.602 c.1.15.7 124169 1tvlA 454 10.79 c.1.16.4 107366 1w1iE 357 11.10 c.1.9.1 109051 2hk0A 309 11.63 1lucA 355 11.81 c.1.16.1 29547 2i7gA 376 12.62 2gzxA 265 12.83 2f6kA 307 14.00 c.1.9.15 133047 1i0dA 332 14.67 c.1.9.3 61487 2yx0A 342 14.95 1jq5A 370 16.63 e.22.1.2 67084 2agtA 319 17.14 1lvwA 295 20.26 c.68.1.6 84723 2oa8A 233 20.47 1lucB 324 20.66 c.1.16.1 29548 1y0eA 223 22.61 c.1.2.5 116297 2qahA 303 23.34 2ac7A 235 24.82 c.56.2.1 126543 1a4mA 349 25.42 c.1.9.1 29014 1kq3A 376 26.42 e.22.1.2 68790 1fkx 349 27.12 1fxoA 293 27.82 c.68.1.6 34524 1qh5A 260 29.09 d.157.1.2 42057 2q02A 272 29.28 1w8sA 263 30.60 c.1.10.1 120744 1qisA 396 31.82 c.67.1.1 34284 1nqkA 381 33.30 c.1.16.4 92050 1korA 400 35.90 c.26.2.1,d.210.1.1 72824,72825 2d69A 430 36.20 c.1.14.1,d.58.9.1 131292,131293 2qyuA 627 38.67 2dskA 311 40.70 2f06A 144 41.04 d.58.18.11,d.58.18.11 132652,132653 2gokA 429 42.15 1rxyA 253 43.30 c.56.2.1 98065 2ffiA 288 43.44 c.1.9.15 133385 1gg4A 452 43.70 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1ars 396 45.26 2d2jA 329 48.45 c.1.9.3 131175 1fi4A 416 48.61 d.14.1.5,d.58.26.2 59847,59848 3c8nA 356 50.02 2r0bA 154 51.60 1ojxA 263 52.58 c.1.10.1 93164 1xrtA 467 53.25 b.92.1.3,c.1.9.6 122258,122259 1o0yA 260 53.83 c.1.10.1 80756 3bofA 566 54.32 1o12A 376 58.23 b.92.1.5,c.1.9.10 80758,80759 1s2oA 244 59.11 c.108.1.10 118846 1k47A 337 60.19 d.14.1.5,d.58.26.4 72040,72041 1zzwA 149 61.74 1bf6A 291 61.85 c.1.9.3 29065 2jg2A 422 62.06 1zgdA 312 62.45 2bp1A 360 62.93 2hejA 323 63.12 1vl2A 421 63.55 c.26.2.1,d.210.1.1 108708,108709 1frb 315 63.82 2ahrA 259 63.99 a.100.1.10,c.2.1.6 126775,126776 1k77A 260 64.38 c.1.15.5 72096 2qulA 290 64.42 1g57A 217 64.84 d.115.1.2 60253 1qf9A 194 64.94 c.37.1.1 31848 2i57A 438 65.07 1ads 315 65.18 3c86A 328 66.01 1pszA 303 68.55 c.92.2.2 35600 3buvA 326 69.18 1ytw 306 70.84 1xwyA 264 71.62 c.1.9.12 122411 2fb2A 340 72.47 1o2dA 371 72.97 e.22.1.2 86591 2j6vA 301 73.40 1d5rA 324 74.93 b.7.1.1,c.45.1.1 23181,32697 1kvkA 395 75.19 d.14.1.5,d.58.26.3 73060,73061 2ftwA 521 75.89 b.92.1.3,c.1.9.6 134083,134084 1snnA 227 76.77 d.115.1.2 105821 1oj4A 283 76.81 d.14.1.5,d.58.26.5 93083,93084 1rhcA 330 76.99 c.1.16.3 97468 1iugA 352 77.53 c.67.1.3 90699 1tzfA 259 77.95 c.68.1.13 107476 2v3zA 440 79.18 2nt2A 145 79.67 2amxA 376 80.50 c.1.9.1 127024 3bi1A 709 81.53 1jvsA 400 81.62 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1p15A 253 82.29 c.45.1.2 93894 3xis 387 82.77 1gvfA 286 83.09 c.1.10.2 70599 1j96A 323 85.57 c.1.7.1 71616 1v93A 296 85.70 c.1.23.1 100532 2f4dA 184 86.51 1r0kA 388 86.88 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1u6zA 513 89.87 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610