# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.87e-19 1m65A 245 1.31e-13 c.6.3.1 84847 2anuA 255 1.35e-10 c.6.3.1 127058 2hnhA 910 1.45e-07 2p1jA 186 0.02421 1wljA 189 0.1363 c.55.3.5 114734 1j9aA 184 0.2926 c.55.3.5 84135 1v77A 212 0.5058 c.6.3.2 108402 1yw1A 442 1.082 c.1.16.4 124130 1ytaA 180 1.114 c.55.3.5 124002 1j53A 186 1.192 c.55.3.5 77076 2igiA 180 1.337 1w0hA 204 1.513 c.55.3.5 114064 2ob3A 330 1.556 1j54A 186 1.880 c.55.3.5 77077 1y97A 238 1.907 c.55.3.5 122773 1ezwA 349 2.764 c.1.16.3 29558 2guiA 194 2.891 c.55.3.5 135737 2f96A 224 2.991 c.55.3.5 133153 3b9oA 440 3.260 2qw5A 335 4.692 2i7gA 376 6.314 1zuaX 317 6.851 1tvlA 454 7.210 c.1.16.4 107366 1qtwA 285 7.466 c.1.15.1 29392 1i0dA 332 7.895 c.1.9.3 61487 1yx1A 264 8.568 c.1.15.7 124169 1w1iE 357 8.983 c.1.9.1 109051 2qxfA 482 9.385 1lucA 355 9.688 c.1.16.1 29547 2agtA 319 9.876 1fkx 349 13.04 2gzxA 265 13.19 2yx0A 342 14.58 1lucB 324 14.66 c.1.16.1 29548 2d2jA 329 16.74 c.1.9.3 131175 1qh5A 260 17.66 d.157.1.2 42057 1w8sA 263 18.34 c.1.10.1 120744 1kq3A 376 18.44 e.22.1.2 68790 3c8nA 356 20.58 2hk0A 309 21.37 2q02A 272 22.19 2j6vA 301 22.44 2oa8A 233 23.11 2ao0A 324 23.19 3bofA 566 23.45 1jq5A 370 23.75 e.22.1.2 67084 1y0eA 223 24.10 c.1.2.5 116297 1a4mA 349 25.72 c.1.9.1 29014 1qf9A 194 28.82 c.37.1.1 31848 1korA 400 30.27 c.26.2.1,d.210.1.1 72824,72825 1qisA 396 30.81 c.67.1.1 34284 2vc7A 314 32.08 3c86A 328 32.93 1bf6A 291 32.93 c.1.9.3 29065 2ac7A 235 33.22 c.56.2.1 126543 2nqlA 388 33.43 1xwyA 264 34.14 c.1.9.12 122411 2bp1A 360 34.67 1ads 315 38.05 1nqkA 381 38.19 c.1.16.4 92050 1fxoA 293 38.41 c.68.1.6 34524 1vl2A 421 39.26 c.26.2.1,d.210.1.1 108708,108709 1f07A 321 39.38 c.1.16.3 59560 1tzfA 259 39.57 c.68.1.13 107476 1hw6A 278 39.91 c.1.7.1 61296 1vbjA 281 40.69 1zsxA 347 41.51 2ffiA 288 43.12 c.1.9.15 133385 2f06A 144 43.76 d.58.18.11,d.58.18.11 132652,132653 1o0yA 260 43.88 c.1.10.1 80756 2qahA 303 44.17 2f6kA 307 44.79 c.1.9.15 133047 1lvwA 295 45.78 c.68.1.6 84723 1zgdA 312 48.61 1gg4A 452 48.64 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1rrmA 386 49.42 e.22.1.2 105081 1rhcA 330 50.74 c.1.16.3 97468 2r0bA 154 52.41 1k77A 260 53.40 c.1.15.5 72096 3buvA 326 53.55 1us0A 316 53.80 c.1.7.1 99850 1pszA 303 54.28 c.92.2.2 35600 1frb 315 54.33 1ojxA 263 54.42 c.1.10.1 93164 2gokA 429 55.41 1zzwA 149 56.53 2ahrA 259 59.07 a.100.1.10,c.2.1.6 126775,126776 2hejA 323 59.32 2f4dA 184 59.34 1gveA 327 59.37 c.1.7.1 70597 1i60A 278 59.87 c.1.15.4 71118 1kvkA 395 60.17 d.14.1.5,d.58.26.3 73060,73061 1fi4A 416 61.05 d.14.1.5,d.58.26.2 59847,59848 3xis 387 63.62 1s2oA 244 64.26 c.108.1.10 118846 1xvlA 321 64.74 c.92.2.2 122380 2dskA 311 65.12 1jvsA 400 65.21 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1v93A 296 65.82 c.1.23.1 100532 1xrtA 467 65.89 b.92.1.3,c.1.9.6 122258,122259 1rzuA 485 66.71 c.87.1.8 105140 1vicA 262 67.66 c.68.1.13 100756 2jg2A 422 68.61 2d69A 430 69.48 c.1.14.1,d.58.9.1 131292,131293 2fb2A 340 69.56 3bi1A 709 69.88 1r0kA 388 72.52 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1qopA 268 73.48 c.1.2.4 28570 1snnA 227 73.58 d.115.1.2 105821 1ars 396 74.18 1gkrA 458 76.73 b.92.1.3,c.1.9.6 70251,70252 3cnyA 301 77.00 2g0wA 296 78.08 c.1.15.4 134503 1zbmA 280 78.26 c.94.1.1 124858 1gvfA 286 78.57 c.1.10.2 70599 2amxA 376 79.97 c.1.9.1 127024 1o2dA 371 82.89 e.22.1.2 86591 1j96A 323 83.34 c.1.7.1 71616 1o5kA 306 84.08 c.1.10.1 92504 2eplX 627 84.82 2i57A 438 86.01 1k47A 337 86.36 d.14.1.5,d.58.26.4 72040,72041 2i1qA 322 86.93 a.60.4.1,c.37.1.11 136984,136985 1vflA 356 88.20 c.1.9.1 120041