# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.99e-19 1m65A 245 1.33e-13 c.6.3.1 84847 2anuA 255 2.02e-10 c.6.3.1 127058 2hnhA 910 4.11e-07 2p1jA 186 0.01970 1wljA 189 0.1449 c.55.3.5 114734 1j9aA 184 0.3004 c.55.3.5 84135 1v77A 212 0.5871 c.6.3.2 108402 1ytaA 180 0.9632 c.55.3.5 124002 1yw1A 442 1.075 c.1.16.4 124130 1j53A 186 1.126 c.55.3.5 77076 1y97A 238 1.244 c.55.3.5 122773 2igiA 180 1.415 2ob3A 330 1.614 1j54A 186 1.855 c.55.3.5 77077 2guiA 194 1.934 c.55.3.5 135737 1w0hA 204 1.961 c.55.3.5 114064 2f96A 224 2.367 c.55.3.5 133153 1ezwA 349 2.877 c.1.16.3 29558 3b9oA 440 3.189 1yx1A 264 4.430 c.1.15.7 124169 2i7gA 376 4.484 1tvlA 454 5.085 c.1.16.4 107366 1qtwA 285 5.663 c.1.15.1 29392 2qxfA 482 6.885 2qw5A 335 6.927 1i0dA 332 7.985 c.1.9.3 61487 1zuaX 317 8.419 1lucB 324 8.641 c.1.16.1 29548 1lucA 355 8.805 c.1.16.1 29547 1w1iE 357 13.00 c.1.9.1 109051 2oa8A 233 13.15 2agtA 319 13.21 2gzxA 265 15.43 2q02A 272 16.10 2d2jA 329 16.83 c.1.9.3 131175 1qisA 396 18.47 c.67.1.1 34284 1qh5A 260 19.69 d.157.1.2 42057 1fkx 349 21.10 1korA 400 21.22 c.26.2.1,d.210.1.1 72824,72825 1kq3A 376 21.60 e.22.1.2 68790 1jq5A 370 24.64 e.22.1.2 67084 1vl2A 421 24.78 c.26.2.1,d.210.1.1 108708,108709 1fxoA 293 26.24 c.68.1.6 34524 2f6kA 307 26.60 c.1.9.15 133047 2hk0A 309 27.24 1a4mA 349 27.40 c.1.9.1 29014 1gg4A 452 27.60 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2yx0A 342 29.27 1y0eA 223 31.86 c.1.2.5 116297 1xrtA 467 32.03 b.92.1.3,c.1.9.6 122258,122259 3bofA 566 32.74 1w8sA 263 33.07 c.1.10.1 120744 1bf6A 291 33.29 c.1.9.3 29065 3c8nA 356 33.63 2bp1A 360 34.28 1lvwA 295 35.98 c.68.1.6 84723 2ffiA 288 36.25 c.1.9.15 133385 2nqlA 388 37.54 1ars 396 37.68 2ac7A 235 38.66 c.56.2.1 126543 1rhcA 330 38.80 c.1.16.3 97468 1ads 315 39.51 1nqkA 381 39.86 c.1.16.4 92050 2vc7A 314 40.69 3xis 387 41.98 2ahrA 259 42.17 a.100.1.10,c.2.1.6 126775,126776 1f07A 321 42.88 c.1.16.3 59560 2qahA 303 42.92 1ojxA 263 43.57 c.1.10.1 93164 1v93A 296 44.36 c.1.23.1 100532 1qf9A 194 47.27 c.37.1.1 31848 1zgdA 312 47.39 1pszA 303 48.53 c.92.2.2 35600 2f06A 144 49.67 d.58.18.11,d.58.18.11 132652,132653 1xwyA 264 50.17 c.1.9.12 122411 1hw6A 278 50.39 c.1.7.1 61296 1o0yA 260 50.73 c.1.10.1 80756 2qyuA 627 50.99 1k77A 260 52.30 c.1.15.5 72096 2dskA 311 58.16 3c86A 328 59.20 2gokA 429 59.77 1frb 315 61.12 2dztA 248 61.52 2jg2A 422 61.83 2qulA 290 62.70 1us0A 316 63.33 c.1.7.1 99850 1rrmA 386 65.10 e.22.1.2 105081 2hejA 323 65.71 2j6vA 301 66.77 2f4dA 184 67.18 1xvlA 321 67.33 c.92.2.2 122380 2g0wA 296 67.45 c.1.15.4 134503 1tzfA 259 68.16 c.68.1.13 107476 1ahxA 396 68.54 c.67.1.1 34293 1j96A 323 69.66 c.1.7.1 71616 3buvA 326 69.69 1kvkA 395 71.09 d.14.1.5,d.58.26.3 73060,73061 2fb2A 340 71.90 1s2oA 244 72.40 c.108.1.10 118846 2uz0A 263 74.42 1i60A 278 74.81 c.1.15.4 71118 2z06A 252 75.31 3cnyA 301 75.63 2b81A 323 76.51 1zsxA 347 76.52 1qfeA 252 77.05 c.1.10.1 29167 1snnA 227 77.79 d.115.1.2 105821 1qrrA 394 78.10 c.2.1.2 29824 3chvA 284 78.34 2amxA 376 79.00 c.1.9.1 127024 1o5kA 306 80.19 c.1.10.1 92504 1vbjA 281 81.55 1dqsA 393 81.89 e.22.1.1 43347 1gqnA 252 82.16 c.1.10.1 90514 1rzuA 485 82.66 c.87.1.8 105140 2obiA 183 82.68 1k47A 337 83.05 d.14.1.5,d.58.26.4 72040,72041 1wd7A 261 85.00 c.113.1.1 114526 2qi2A 347 85.25 1vicA 262 85.41 c.68.1.13 100756 2i57A 438 86.03 4xis 387 86.04 2ftwA 521 86.97 b.92.1.3,c.1.9.6 134083,134084 1ytw 306 86.97 2d59A 144 87.22 c.2.1.8 131266 2puzA 419 88.21 3bi1A 709 88.34 1gveA 327 88.49 c.1.7.1 70597 1qopA 268 88.68 c.1.2.4 28570 1zbmA 280 89.01 c.94.1.1 124858