# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.24e-17 1m65A 245 6.83e-12 c.6.3.1 84847 2anuA 255 1.77e-08 c.6.3.1 127058 2hnhA 910 4.43e-05 1v77A 212 0.1226 c.6.3.2 108402 2p1jA 186 0.3420 3cnyA 301 2.206 1yx1A 264 3.863 c.1.15.7 124169 2qahA 303 4.779 2qw5A 335 4.852 1ytaA 180 4.875 c.55.3.5 124002 1wljA 189 5.249 c.55.3.5 114734 1qtwA 285 5.313 c.1.15.1 29392 1vflA 356 5.410 c.1.9.1 120041 1j9aA 184 5.416 c.55.3.5 84135 2hk0A 309 6.289 3bofA 566 6.603 2pgfA 371 6.892 2guiA 194 7.484 c.55.3.5 135737 2gzxA 265 7.788 2amxA 376 8.081 c.1.9.1 127024 1zuaX 317 8.357 2agtA 319 8.417 1j53A 186 8.786 c.55.3.5 77076 1nq6A 302 8.874 c.1.8.3 92046 1i60A 278 8.902 c.1.15.4 71118 1v93A 296 8.995 c.1.23.1 100532 1fkx 349 9.238 2vc7A 314 9.249 3b9oA 440 9.292 2igiA 180 10.01 1k77A 260 10.15 c.1.15.5 72096 1w1iE 357 10.58 c.1.9.1 109051 1xyzA 347 11.84 c.1.8.3 28804 1j54A 186 12.17 c.55.3.5 77077 1h5yA 253 12.58 c.1.2.1 65638 2bp1A 360 12.60 2hejA 323 12.72 2q02A 272 13.37 2f6kA 307 13.47 c.1.9.15 133047 2qulA 290 14.20 2ffiA 288 14.69 c.1.9.15 133385 1i1wA 303 14.85 c.1.8.3 76732 1frb 315 14.96 1gveA 327 15.41 c.1.7.1 70597 3cjpA 272 15.46 1n82A 331 16.00 c.1.8.3 91703 1q7zA 566 16.16 c.1.21.2,c.1.26.1 96090,96091 2f96A 224 16.68 c.55.3.5 133153 1fh9A 312 17.33 c.1.8.3 28913 3buvA 326 17.43 1bf6A 291 17.96 c.1.9.3 29065 1v0lA 313 18.11 c.1.8.3 108207 2ob3A 330 18.70 1xp3A 307 20.19 c.1.15.1 122210 2gokA 429 22.21 1vhrA 184 22.59 c.45.1.1 32651 2q8xA 331 23.40 2gshA 414 25.47 1y0eA 223 25.73 c.1.2.5 116297 1uozA 315 25.92 c.6.1.1 113354 1j96A 323 26.51 c.1.7.1 71616 1a0dA 440 27.02 c.1.15.3 29533 3xis 387 27.20 1ta3B 303 27.70 c.1.8.3 106732 1tvlA 454 29.45 c.1.16.4 107366 2bv9A 290 29.84 c.1.8.3 129242 1zgdA 312 30.19 1vjzA 341 30.33 c.1.8.3 100838 2yx0A 342 30.42 1a4mA 349 31.95 c.1.9.1 29014 1yw1A 442 32.54 c.1.16.4 124130 1v5xA 203 33.51 c.1.2.4 100377 1y97A 238 33.72 c.55.3.5 122773 1o0yA 260 34.83 c.1.10.1 80756 2f4dA 184 35.34 1rmwA 212 35.62 2citA 282 36.62 c.1.8.3 130499 1zzwA 149 37.65 1vbuA 328 38.52 c.1.8.3 119963 2depA 356 39.26 2dskA 311 39.95 2o3hA 285 42.23 1nytA 271 42.58 c.2.1.7,c.58.1.5 86417,86418 2bgsA 344 42.71 1fobA 334 42.87 c.1.8.3 83255 2cygA 312 43.40 c.1.8.3 131025 1yc5A 246 43.45 c.31.1.5 122910 1yxyA 234 43.85 c.1.2.5 124203 2i57A 438 45.38 2dvtA 327 45.51 c.1.9.15 131793 2r0bA 154 46.59 2g0wA 296 47.40 c.1.15.4 134503 1kvkA 395 47.86 d.14.1.5,d.58.26.3 73060,73061 1lucA 355 48.16 c.1.16.1 29547 1w0hA 204 48.41 c.55.3.5 114064 1n7kA 234 48.53 c.1.10.1 85374 1s2oA 244 48.77 c.108.1.10 118846 1qo2A 241 49.15 c.1.2.1 28533 1ojxA 263 50.47 c.1.10.1 93164 2d2jA 329 50.76 c.1.9.3 131175 1thfD 253 51.42 c.1.2.1 28535 1k47A 337 51.51 d.14.1.5,d.58.26.4 72040,72041 1xwyA 264 51.70 c.1.9.12 122411 1w8sA 263 53.04 c.1.10.1 120744 3c86A 328 53.57 1zzmA 259 53.57 c.1.9.12 125911 2p3zA 415 54.24 1muwA 386 55.44 c.1.15.3 79495 1hw6A 278 55.49 c.1.7.1 61296 1zsxA 347 55.55 2ho4A 259 56.31 1xfkA 336 56.65 c.42.1.1 115264 1yixA 265 56.69 c.1.9.12 123371 1qnrA 344 58.09 c.1.8.3 28834 1tk9A 188 58.22 c.80.1.3 107082 1rhcA 330 58.45 c.1.16.3 97468 2i7gA 376 58.63 2i2wA 212 58.66 2egzA 219 60.53 3c8nA 356 60.96 2i1qA 322 61.03 a.60.4.1,c.37.1.11 136984,136985 1exbA 332 61.10 c.1.7.1 28666 1vh7A 265 61.81 c.1.2.1 100646 1ynpA 317 62.56 2jg2A 422 62.61 1gg4A 452 62.85 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1s1pA 331 63.27 c.1.7.1 98350 2a0nA 265 63.41 c.1.2.1 125961 1lqaA 346 63.88 c.1.7.1 84674 2j6vA 301 64.43 1us0A 316 64.57 c.1.7.1 99850 1gkpA 458 65.14 b.92.1.3,c.1.9.6 70231,70232 2oa8A 233 65.17 1bg4A 302 65.27 c.1.8.3 28806 1escA 306 65.79 c.23.10.1 31334 2yvaA 196 66.99 1w32A 348 67.06 c.1.8.3 114120 1v2dA 381 67.40 c.67.1.1 108281 2jfuA 291 69.22 2qt3A 403 69.24 2p10A 286 70.98 2c4nA 250 72.61 c.108.1.14 129837 1nsjA 205 73.80 c.1.2.4 28560 1ads 315 73.97 1ajsA 412 74.80 c.67.1.1 34276 1m5wA 243 75.23 c.1.24.1 84836 1j6oA 268 76.74 c.1.9.12 77088 1ra0A 430 76.76 b.92.1.2,c.1.9.5 111756,111757 1b5tA 275 76.78 c.1.23.1 29676 1lucB 324 77.16 c.1.16.1 29548 1i0dA 332 77.27 c.1.9.3 61487 2q09A 416 77.37 1vpqA 273 77.70 c.1.32.1 113974 2puzA 419 78.57 1ur1A 378 78.74 c.1.8.3 99804 1xrtA 467 79.90 b.92.1.3,c.1.9.6 122258,122259 2nt2A 145 80.34 2i2xB 258 82.58 2imrA 420 84.87 1xzoA 174 86.13 c.47.1.10 122474 2esbA 188 88.09