# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.69e-17 1m65A 245 2.94e-12 c.6.3.1 84847 2anuA 255 2.26e-09 c.6.3.1 127058 2hnhA 910 3.27e-06 1v77A 212 0.3626 c.6.3.2 108402 2p1jA 186 1.833 1j53A 186 1.953 c.55.3.5 77076 2guiA 194 4.065 c.55.3.5 135737 1qtwA 285 4.214 c.1.15.1 29392 2qw5A 335 4.248 3b9oA 440 4.352 1wljA 189 4.601 c.55.3.5 114734 1zuaX 317 4.868 1j54A 186 5.005 c.55.3.5 77077 1j9aA 184 5.672 c.55.3.5 84135 3xis 387 7.521 2vc7A 314 8.284 2qulA 290 8.299 2f6kA 307 8.611 c.1.9.15 133047 3cnyA 301 8.781 1yx1A 264 9.104 c.1.15.7 124169 2hejA 323 9.248 2igiA 180 9.299 1ytaA 180 9.777 c.55.3.5 124002 1frb 315 10.04 1yw1A 442 10.07 c.1.16.4 124130 1y0eA 223 10.60 c.1.2.5 116297 1fkx 349 10.62 2q02A 272 10.68 1j96A 323 10.76 c.1.7.1 71616 1nq6A 302 11.14 c.1.8.3 92046 2yx0A 342 11.92 1ra0A 430 12.97 b.92.1.2,c.1.9.5 111756,111757 1w1iE 357 14.28 c.1.9.1 109051 2qahA 303 14.47 2agtA 319 14.76 2ob3A 330 14.85 1vflA 356 15.53 c.1.9.1 120041 2gzxA 265 16.52 2hk0A 309 16.83 1tvlA 454 17.73 c.1.16.4 107366 1vhrA 184 18.28 c.45.1.1 32651 1bf6A 291 18.96 c.1.9.3 29065 2pgfA 371 19.28 2dskA 311 19.54 2gokA 429 19.79 1w0hA 204 22.36 c.55.3.5 114064 1i60A 278 22.50 c.1.15.4 71118 1h5yA 253 22.62 c.1.2.1 65638 1k6wA 426 23.26 b.92.1.2,c.1.9.5 68236,68237 3buvA 326 23.61 3bofA 566 23.64 4xis 387 23.72 2bp1A 360 23.92 2gshA 414 24.22 1k77A 260 26.18 c.1.15.5 72096 2amxA 376 26.38 c.1.9.1 127024 2i57A 438 26.78 1lucA 355 27.51 c.1.16.1 29547 1v93A 296 27.87 c.1.23.1 100532 1o0yA 260 28.97 c.1.10.1 80756 1zgdA 312 29.45 2p3zA 415 29.66 1qnrA 344 29.95 c.1.8.3 28834 1yc5A 246 30.58 c.31.1.5 122910 1zsxA 347 30.65 1a0dA 440 32.59 c.1.15.3 29533 1m2kA 249 33.61 c.31.1.5 84754 2nxfA 322 34.36 1gveA 327 34.67 c.1.7.1 70597 1fobA 334 35.33 c.1.8.3 83255 2p10A 286 35.84 1zzwA 149 36.17 2hbvA 334 36.71 c.1.9.15 136320 1ojxA 263 37.20 c.1.10.1 93164 1uteA 313 37.43 d.159.1.1 42078 2ffiA 288 37.52 c.1.9.15 133385 2r0bA 154 38.99 2ehhA 294 41.69 1w8sA 263 41.82 c.1.10.1 120744 1muwA 386 41.85 c.1.15.3 79495 1n82A 331 41.94 c.1.8.3 91703 3cjpA 272 42.30 1rhcA 330 42.50 c.1.16.3 97468 2bgsA 344 42.98 2i1qA 322 43.14 a.60.4.1,c.37.1.11 136984,136985 1jq5A 370 43.49 e.22.1.2 67084 2eg6A 347 43.78 2dvtA 327 44.21 c.1.9.15 131793 3chvA 284 46.03 1xwyA 264 47.35 c.1.9.12 122411 1vjzA 341 49.44 c.1.8.3 100838 1q7zA 566 49.52 c.1.21.2,c.1.26.1 96090,96091 2z06A 252 50.57 1ajsA 412 51.02 c.67.1.1 34276 1ytw 306 52.61 1vbjA 281 53.10 1kq3A 376 53.33 e.22.1.2 68790 2aamA 309 55.21 c.1.8.15 126489 2jfuA 291 55.38 1fh9A 312 55.84 c.1.8.3 28913 1i1wA 303 59.10 c.1.8.3 76732 1xrtA 467 59.45 b.92.1.3,c.1.9.6 122258,122259 1gkpA 458 60.06 b.92.1.3,c.1.9.6 70231,70232 2ac7A 235 60.24 c.56.2.1 126543 4kbpA 432 60.95 b.1.12.1,d.159.1.1 22345,42064 3c8nA 356 61.26 1v5xA 203 61.83 c.1.2.4 100377 1vpqA 273 62.53 c.1.32.1 113974 2cygA 312 64.67 c.1.8.3 131025 2imrA 420 65.25 2hy1A 280 66.32 2eplX 627 68.40 1zosA 230 68.72 2r8wA 332 69.12 2a0nA 265 69.19 c.1.2.1 125961 2g3fA 421 69.27 1thfD 253 69.42 c.1.2.1 28535 1qwkA 317 69.88 c.1.7.1 96482 1exbA 332 70.34 c.1.7.1 28666 1v6tA 255 70.82 c.6.2.5 113550 1sflA 238 73.39 c.1.10.1 112077 1za0A 275 73.52 a.25.1.2 124774 1hw6A 278 73.99 c.1.7.1 61296 1i0dA 332 75.19 c.1.9.3 61487 1g5tA 196 75.44 c.37.1.11 32366 2puzA 419 75.51 2rfgA 297 75.62 1lucB 324 75.86 c.1.16.1 29548 1gg4A 452 75.97 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1o12A 376 77.54 b.92.1.5,c.1.9.10 80758,80759 2csuA 457 78.56 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2fwmX 250 78.57 1o5kA 306 79.34 c.1.10.1 92504 2j4jA 226 79.59 1vh7A 265 79.62 c.1.2.1 100646 1yz4A 160 79.65 3c86A 328 79.88 1ads 315 80.94 2oo6A 409 81.32 1us0A 316 81.41 c.1.7.1 99850 2nqlA 388 81.68 2pozA 392 81.80 2dkfA 431 81.84 2f4dA 184 82.88 1yixA 265 83.01 c.1.9.12 123371 1a4mA 349 83.61 c.1.9.1 29014 1ede 310 85.39 2nt2A 145 85.96 1jykA 254 87.07 c.68.1.13 67458 1w32A 348 87.51 c.1.8.3 114120 1onwA 390 87.61 b.92.1.7,c.1.9.13 87172,87173 1wrmA 165 89.31