# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.53e-10 1m65A 245 6.92e-07 c.6.3.1 84847 2anuA 255 0.006748 c.6.3.1 127058 2hnhA 910 1.716 1vemA 516 3.121 b.3.1.1,c.1.8.1 120021,120022 1hdoA 206 4.099 c.2.1.2 60965 2nxfA 322 4.238 2cw6A 298 7.674 2gduA 504 8.303 b.71.1.1,c.1.8.1 135032,135033 1itcA 516 8.582 b.3.1.1,c.1.8.1 83705,83706 1frb 315 9.411 1qo2A 241 9.636 c.1.2.1 28533 1r7aA 504 9.910 b.71.1.1,c.1.8.1 97192,97193 3cjpA 272 9.97 1w3iA 293 10.66 c.1.10.1 109152 1gveA 327 11.79 c.1.7.1 70597 1xq6A 253 12.02 c.2.1.2 115829 2bp1A 360 13.48 2bgsA 344 13.97 1yxyA 234 14.54 c.1.2.5 124203 1yhtA 367 14.65 c.1.8.6 123213 1gkpA 458 14.83 b.92.1.3,c.1.9.6 70231,70232 1us0A 316 16.38 c.1.7.1 99850 1n82A 331 20.66 c.1.8.3 91703 2depA 356 20.93 1lqaA 346 21.13 c.1.7.1 84674 1mi3A 322 21.49 c.1.7.1 91274 1ra0A 430 21.81 b.92.1.2,c.1.9.5 111756,111757 2q8xA 331 22.40 1zgdA 312 22.48 1e43A 483 25.15 b.71.1.1,c.1.8.1 59217,59218 1huqA 164 25.82 c.37.1.8 32020 2q46A 253 26.02 c.2.1.2 139825 1tv8A 340 26.20 c.1.28.3 107352 2q09A 416 27.19 1vzwA 244 28.49 c.1.2.1 120553 1zzmA 259 28.65 c.1.9.12 125911 2bs9A 503 28.79 b.71.1.2,c.1.8.3 129062,129063 2nuwA 288 29.84 2i5gA 325 29.94 2hx1A 284 30.08 1yixA 265 30.37 c.1.9.12 123371 1r2qA 170 30.59 c.37.1.8 96874 1ek0A 170 30.77 c.37.1.8 32076 2ftwA 521 31.10 b.92.1.3,c.1.9.6 134083,134084 2pozA 392 31.36 2ewsA 287 31.41 1bf6A 291 31.47 c.1.9.3 29065 2bmeA 186 32.40 c.37.1.8 128790 1lwjA 441 32.65 b.71.1.1,c.1.8.1 74303,74304 2agtA 319 33.70 2p5yA 311 34.47 1yzqA 170 36.09 c.37.1.8 124286 1o12A 376 36.33 b.92.1.5,c.1.9.10 80758,80759 1ads 315 36.42 2a4kA 263 36.44 c.2.1.2 126156 2c5aA 379 37.05 c.2.1.2 129894 2gokA 429 37.32 1zuaX 317 37.78 1x3sA 195 38.71 c.37.1.8 121670 1byb 495 39.94 1mh1A 186 40.99 c.37.1.8 32002 2podA 410 41.13 2i57A 438 41.15 1ub3A 220 41.24 c.1.10.1 88395 1z06A 189 41.94 c.37.1.8 124301 1ua7A 422 42.39 b.71.1.1,c.1.8.1 107759,107760 1mzhA 225 42.41 c.1.10.1 79698 3buvA 326 43.24 2qulA 290 43.27 1zsxA 347 44.16 2gwnA 452 44.21 2p10A 286 44.28 1oivA 191 44.65 c.37.1.8 93076 2agkA 260 45.78 1r85A 379 45.91 c.1.8.3 104839 1qh5A 260 46.22 d.157.1.2 42057 1bg4A 302 46.39 c.1.8.3 28806 1ctqA 166 46.57 c.37.1.8 31965 2qahA 303 46.86 1vjzA 341 47.48 c.1.8.3 100838 1dxeA 256 47.94 c.1.12.5 29310 2r91A 286 48.21 1w32A 348 49.03 c.1.8.3 114120 2bgkA 278 49.14 c.2.1.2 128480 2obwA 258 50.10 2aamA 309 50.51 c.1.8.15 126489 1v3hA 495 51.43 c.1.8.1 108303 2g3fA 421 52.20 2fb2A 340 52.64 2a9kA 187 52.85 c.37.1.8 126442 2qrlA 394 52.95 2ew1A 201 53.56 c.37.1.8 132446 3rabA 169 53.77 c.37.1.8 32018 1rmwA 212 53.99 2fn4A 181 54.86 c.37.1.8 133806 1z0jA 170 55.77 c.37.1.8 124319 2h8zA 359 57.31 1ydnA 295 57.65 2ffqA 171 57.79 2bfgA 503 57.86 b.71.1.2,c.1.8.3 128423,128424 1qsgA 265 57.87 c.2.1.2 29935 1sbyA 254 58.10 c.2.1.2 118930 1v77A 212 58.29 c.6.3.2 108402 1d8wA 426 58.54 c.1.15.2 29394 1m7bA 184 59.30 c.37.1.8 74572 2q02A 272 59.72 1k6wA 426 60.37 b.92.1.2,c.1.9.5 68236,68237 2eplX 627 60.56 1wdpA 495 60.70 c.1.8.1 120907 2bogX 286 61.35 1ur1A 378 61.45 c.1.8.3 99804 2ox4A 403 61.61 2oz8A 389 64.06 3bc9A 599 64.19 2qedA 258 64.58 1nvmA 345 65.03 a.5.7.1,c.1.10.5 86249,86250 2puzA 419 65.71 1clxA 347 65.96 c.1.8.3 28899 1mh1 186 67.07 1qgoA 264 67.24 c.92.1.2 35596 2nloA 302 68.47 1hkhA 279 69.06 c.69.1.12 90628 1sb8A 352 69.21 c.2.1.2 105410 1a53A 247 69.36 c.1.2.4 28564 2i1oA 398 70.08 1mv8A 436 70.22 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1b8oA 284 70.60 c.56.2.1 33762 1q7zA 566 71.01 c.1.21.2,c.1.26.1 96090,96091 2ojpA 292 71.21 1kmqA 184 71.74 c.37.1.8 84412 1zjaA 557 72.12 2ovlA 371 72.19 2ao0A 324 72.30 2ce2X 166 73.00 1ceo 343 73.51 2ag5A 246 73.78 c.2.1.2 126719 1nowA 507 73.97 c.1.8.6,d.92.2.1 85936,85937 3cgvA 397 74.32 2o56A 407 76.68 2p5sA 199 76.84 3cz8A 319 76.91 2hxsA 178 78.56 1fxoA 293 79.78 c.68.1.6 34524 1gkrA 458 81.28 b.92.1.3,c.1.9.6 70251,70252 2purA 292 81.66 1ezwA 349 81.78 c.1.16.3 29558 1db3A 372 82.36 c.2.1.2 29813 1u8zA 168 83.05 c.37.1.8 113212 1k6xA 352 83.22 c.2.1.2 68238 1fjhA 257 83.51 c.2.1.2 29870 1z7bA 358 83.71 c.2.1.2 124599 1oixA 191 84.71 c.37.1.8 118710 2b82A 211 84.80 c.108.1.12 128057 3bofA 566 84.88 1b16A 254 84.93 c.2.1.2 29875 3bojA 213 85.65 2hrdA 253 86.28 2az4A 429 87.78 d.157.1.10 127597 1uluA 261 88.38 c.2.1.2 113292 1exbA 332 88.57 c.1.7.1 28666 1ur4A 399 88.61 c.1.8.3 113402 1o1zA 234 88.76 c.1.18.3 86555 1vjpA 394 89.03 c.2.1.3,d.81.1.3 100828,100829