Best Alignments for T0438

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2oasA/T0438-2oasA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2oasA/T0438-2oasA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6122e-531.55e-268
2g39A/T0438-2g39A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g39A/T0438-2g39A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7671e-498.63e-245 c.124.1.2
c.124.1.2
2hj0A/T0438-2hj0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hj0A/T0438-2hj0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7394e-359.13e-161
1ooyA/T0438-1ooyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ooyA/T0438-1ooyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4492e-261.90e-117 c.124.1.3
c.124.1.2
2nvvA/T0438-2nvvA-t2k-global-adpstyle1.a2m 2nvvA/T0438-2nvvA-t2k-global-adpstyle1.al 9.2593e-212.71e-121
2nrcA/T0438-2nrcA-t2k-local-adpstyle1.a2m 2nrcA/T0438-2nrcA-t2k-local-adpstyle1.al 1.3058e-145.31e-79
2nrbA/T0438-2nrbA-t2k-local-adpstyle1.a2m 2nrbA/T0438-2nrbA-t2k-local-adpstyle1.al 1.3218e-145.72e-79
3cdkB/T0438-3cdkB-t2k-global-adpstyle1.a2m 3cdkB/T0438-3cdkB-t2k-global-adpstyle1.al 3.6079e-106.13e-55
1k6dA/T0438-1k6dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1k6dA/T0438-1k6dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1463e-064.61e-40 c.124.1.2
1poiB/T0438-1poiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1poiB/T0438-1poiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1677e-053.44e-24 1poiB c.124.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001