# List of top-scoring protein chains for T0438.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2oasA 436 2.40e-64 2g39A 497 1.20e-57 c.124.1.2,c.124.1.2 134553,134554 2nvvA 506 3.29e-54 1xr4A 509 1.27e-39 c.124.1.2,c.124.1.2 115860,115861 2hj0A 519 2.70e-39 2nrcA 481 7.77e-39 1ooyA 481 7.87e-39 c.124.1.3,c.124.1.2 93388,93389 2nrbA 481 8.01e-39 1oozA 475 8.61e-39 c.124.1.3,c.124.1.2 93392,93393 3cdkB 219 9.86e-28 3cdkA 241 5.83e-11 2ahuA 531 1.15e-10 c.124.1.3,c.124.1.2 126785,126786 1k6dA 220 2.36e-05 c.124.1.2 72082 1poiB 260 1.04e-02 1poiB c.124.1.3 34155 1poiA 317 5.90e-02 1poiA c.124.1.2 34153 2pjmA 226 7.18e-02 1lk5A 229 4.67e-01 c.124.1.4,d.58.40.1 73960,73961 1sjdA 368 2.22e+00 c.1.11.2,d.54.1.1 105632,105633 1a2vA 655 2.89e+00 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1ekmA 656 2.89e+00 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24413,38053,38054 2oqeA 660 2.90e+00 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1gnlA 544 3.03e+00 e.26.1.1 70287 3bq8A 148 3.45e+00 1vb5A 276 3.92e+00 c.124.1.5 113604 1f07A 321 4.43e+00 1ezwA c.1.16.3 59560 2z4sA 440 7.51e+00 1y1pA 342 1.06e+01 c.2.1.2 122550 1q13A 323 1.06e+01 c.1.7.1 111648 1q5mA 322 1.08e+01 c.1.7.1 104539 2dm9A 198 1.09e+01 1fmcA 255 1.50e+01 1cydA c.2.1.2 29856 2ba0G 259 1.61e+01 2dhbB 146 1.80e+01 1abwA a.1.1.2 15556 3beoA 375 1.80e+01 2po1B 277 1.86e+01 2iw2A 494 1.90e+01 2javA 279 1.91e+01 d.144.1.7 138243 2a6yA 256 1.91e+01 b.29.1.13 126318 2gmnA 274 2.03e+01 2h6eA 344 2.05e+01 1yaxA 153 2.13e+01 2d5xB 146 2.17e+01 a.1.1.2 131283 1nnwA 252 2.23e+01 d.159.1.5 80674 1hkqA 132 2.52e+01 a.4.5.10 83555 1vpeA 398 2.62e+01 c.86.1.1 35453 2csbA 519 2.64e+01 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 2fvlA 324 2.65e+01 2rcyA 262 2.88e+01 1w0bA 102 2.93e+01 a.7.11.1 108985 1z8uA 102 2.93e+01 a.7.11.1 124724 1x94A 191 3.12e+01 c.80.1.3 109522 1qfoA 119 3.19e+01 1qfoA b.1.1.1 19708 1x4bA 116 3.27e+01 d.58.7.1 121684 1h4uA 265 3.27e+01 1h4uA d.22.1.2,g.3.11.5 60622,60623 1zq5A 323 3.28e+01 c.1.7.1 125500 1s1pA 331 3.31e+01 c.1.7.1 98350 2azmA 207 3.31e+01 2etxA 209 3.32e+01 1urlA 118 3.34e+01 b.1.1.1 113412 1dmhA 311 3.35e+01 1dmhA b.3.6.1 22633 1yumA 242 3.38e+01 2adoA 196 3.39e+01 1uj6A 227 3.42e+01 c.124.1.4,d.58.40.1 107898,107899 2z0fA 524 3.54e+01 1xodA 118 3.56e+01 b.55.1.4 122202 1w09A 92 3.68e+01 a.7.11.1 108983 1gl4A 285 3.74e+01 d.22.1.2,g.3.11.5 65286,65287 3ccfA 279 3.74e+01 1vcvA 226 3.85e+01 c.1.10.1 119988 3cggA 195 3.88e+01 3bsmA 413 3.98e+01 2nloA 302 4.08e+01 1dy2A 180 4.16e+01 1koe d.169.1.5 42451 1xzyA 90 4.25e+01 a.7.11.1 116275 1rlrA 761 4.39e+01 a.98.1.1,c.7.1.2 18753,30679 1sddB 647 4.40e+01 b.6.1.3,b.6.1.3,b.18.1.2,b.18.1.2 105433,105434,105435,105436 2gnpA 266 4.42e+01 1ybeA 449 4.50e+01 c.1.17.2,d.41.2.2 116605,116606 1tj6A 118 4.53e+01 b.55.1.4 119286 2gc6A 428 4.75e+01 c.59.1.2,c.72.2.2 134952,134953 1j6oA 268 4.76e+01 c.1.9.12 77088 2c35B 172 4.84e+01 b.40.4.5,d.230.1.1 129712,129713 1s5aA 150 4.93e+01 d.17.4.10 98525 2gc5A 428 5.00e+01 c.59.1.2,c.72.2.2 134950,134951 2nraC 276 5.05e+01 2hejA 323 5.49e+01 1txgA 335 5.51e+01 a.100.1.6,c.2.1.6 112775,112776 2hnkA 239 5.53e+01 2ipfA 318 5.54e+01 1b7bA 310 5.54e+01 1b7bA c.73.1.1 34963 1qqcA 773 5.77e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1qibA 161 5.83e+01 1ck7A d.92.1.11 40359 2bruC 186 5.88e+01 6ldhA 329 5.94e+01 c.2.1.5,d.162.1.1 30161,42128 1hnjA 317 6.03e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1yxyA 234 6.20e+01 c.1.2.5 124203 3bqaA 148 6.21e+01 1g8mA 593 6.21e+01 1g8mA c.24.1.3,c.97.1.4 60371,60372 1m9nA 613 6.21e+01 c.24.1.3,c.97.1.4 78870,78871 1hyhA 309 6.28e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1j0dA 341 6.40e+01 c.79.1.1 83902 1qi9A 556 6.41e+01 1qhbA a.111.1.2 19053 2czdA 208 6.41e+01 c.1.2.3 131045 2qahA 303 6.47e+01 1z6tA 591 6.60e+01 2cfyA 521 6.61e+01 1wckA 220 6.63e+01 2zg5A 397 6.64e+01 1j0eA 341 6.67e+01 c.79.1.1 83906 1qgnA 445 6.70e+01 1ibjA c.67.1.3 34403 1f2dA 341 6.76e+01 1f2dA c.79.1.1 35298 2a8sA 212 6.82e+01 d.113.1.1 126416 1u20A 212 6.88e+01 d.113.1.1 119463 1hnhA 317 6.94e+01 1hn9A c.95.1.2,c.95.1.2 35983,35984 2iq7A 339 7.05e+01 7apiA 347 7.09e+01 1ovaA e.1.1.1 42631 2a8qA 212 7.12e+01 d.113.1.1 126412 1d5aA 733 7.21e+01 1tgoA c.55.3.5,e.8.1.1 33723,43012 2uz1A 563 7.27e+01 1bccC 380 7.29e+01 1be3C f.32.1.1,f.21.1.2 75803,75804 2ipgA 319 7.29e+01 1w2wB 191 7.29e+01 2uz1B 563 7.34e+01 1yrrA 382 7.36e+01 b.92.1.5,c.1.9.10 123935,123936 2p53A 382 7.39e+01 2nt0A 497 7.50e+01 b.71.1.2,c.1.8.3 138561,138562 2v3fA 505 7.64e+01 1t9hA 307 7.70e+01 b.40.4.5,c.37.1.8 112358,112359 1d5sA 334 7.92e+01 e.1.1.1 42635 2j3nA 519 7.95e+01 1vm8A 534 7.97e+01 c.68.1.5 113670