Best Alignments for T0438

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2oasA/T0438-2oasA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2oasA/T0438-2oasA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2484e-495.86e-254
2g39A/T0438-2g39A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g39A/T0438-2g39A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1404e-419.40e-213 c.124.1.2
c.124.1.2
2hj0A/T0438-2hj0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hj0A/T0438-2hj0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7400e-344.91e-154
1ooyA/T0438-1ooyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ooyA/T0438-1ooyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6199e-342.12e-151 c.124.1.3
c.124.1.2
2nvvA/T0438-2nvvA-t04-global-adpstyle1.a2m 2nvvA/T0438-2nvvA-t04-global-adpstyle1.al 1.5855e-223.89e-105
2nrcA/T0438-2nrcA-t04-global-adpstyle1.a2m 2nrcA/T0438-2nrcA-t04-global-adpstyle1.al 1.5911e-201.25e-95
2nrbA/T0438-2nrbA-t04-global-adpstyle1.a2m 2nrbA/T0438-2nrbA-t04-global-adpstyle1.al 1.7777e-202.60e-95
1k6dA/T0438-1k6dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1k6dA/T0438-1k6dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2997e-129.24e-63 c.124.1.2
3cdkB/T0438-3cdkB-t04-local-adpstyle1.a2m 3cdkB/T0438-3cdkB-t04-local-adpstyle1.al 1.6736e-111.19e-48
1poiB/T0438-1poiB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1poiB/T0438-1poiB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7142e-092.09e-40 1poiB c.124.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001