# List of top-scoring protein chains for T0438.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2oasA 436 9.60e-60 2g39A 497 6.00e-51 c.124.1.2,c.124.1.2 134553,134554 2nvvA 506 1.40e-46 1oozA 475 7.67e-43 c.124.1.3,c.124.1.2 93392,93393 1ooyA 481 1.03e-42 c.124.1.3,c.124.1.2 93388,93389 2nrcA 481 1.41e-42 2nrbA 481 1.76e-42 1xr4A 509 2.67e-37 c.124.1.2,c.124.1.2 115860,115861 2ahuA 531 3.37e-35 c.124.1.3,c.124.1.2 126785,126786 2hj0A 519 1.65e-33 3cdkB 219 1.56e-24 3cdkA 241 9.81e-20 1k6dA 220 6.05e-15 c.124.1.2 72082 1poiA 317 5.79e-10 1poiA c.124.1.2 34153 1poiB 260 9.45e-10 1poiB c.124.1.3 34155 2pjmA 226 4.47e-01 1lk5A 229 1.18e+00 c.124.1.4,d.58.40.1 73960,73961 1wdwB 385 1.63e+00 c.79.1.1 120917 1v8zA 388 1.70e+00 c.79.1.1 119873 2furA 209 3.41e+00 b.45.1.1 134185 3tatA 397 3.66e+00 1ajsA c.67.1.1 34379 2infA 359 4.11e+00 1llcA 325 4.11e+00 c.2.1.5,d.162.1.1 30176,42143 2eyuA 261 5.35e+00 1y6jA 318 6.33e+00 c.2.1.5,d.162.1.1 116507,116508 1np3A 338 7.08e+00 a.100.1.2,c.2.1.6 85946,85947 1t5lA 658 7.29e+00 c.37.1.19,c.37.1.19 106455,106456 1d9xA 658 7.33e+00 1d2mA c.37.1.19,c.37.1.19 32419,32420 2d7dA 661 7.37e+00 2fdcA 658 7.39e+00 c.37.1.19,c.37.1.19 133302,133303 2ph1A 262 7.64e+00 1o99A 511 7.74e+00 c.105.1.1,c.76.1.3 81235,81236 1d9zA 657 7.96e+00 1d2mA c.37.1.19,c.37.1.19 32421,32422 5bj4A 385 8.65e+00 c.67.1.1 100875 1f07A 321 8.97e+00 1ezwA c.1.16.3 59560 1bjwA 382 9.01e+00 1bjwA c.67.1.1 34349 1b5oA 385 9.05e+00 c.67.1.1 90401 1bkgA 385 9.08e+00 1bjwA c.67.1.1 34351 1o98A 511 9.38e+00 c.105.1.1,c.76.1.3 86684,86685 1b5pA 385 1.07e+01 c.67.1.1 90403 5ldhA 333 1.08e+01 c.2.1.5,d.162.1.1 30158,42125 5bj3A 385 1.13e+01 c.67.1.1 100871 2gszA 363 1.14e+01 1vp4A 425 1.18e+01 c.67.1.1 113935 1x94A 191 1.20e+01 c.80.1.3 109522 2aujD 309 1.24e+01 2ewvA 372 1.25e+01 1xkyA 301 1.42e+01 c.1.10.1 122094 1smkA 326 1.44e+01 1tk9A 188 1.56e+01 c.80.1.3 107082 2iw2A 494 1.63e+01 1vbgA 876 1.68e+01 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 2pnwA 380 1.78e+01 1lehA 364 1.87e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1ihmA 530 1.92e+01 1ihmA b.121.4.3 62385 1ajsA 412 2.00e+01 1ajsA c.67.1.1 34276 1ur5A 309 2.02e+01 c.2.1.5,d.162.1.1 99807,99808 2po1B 277 2.03e+01 1sevA 362 2.07e+01 2ga8A 359 2.25e+01 1rcuA 195 2.30e+01 c.129.1.1 97295 1tvlA 454 2.32e+01 c.1.16.4 107366 1kqrA 179 2.35e+01 b.29.1.14 72886 1uk8A 282 2.37e+01 c.69.1.10 107907 2fdiA 211 2.41e+01 b.82.2.10 133311 1uxgA 309 2.49e+01 c.2.1.5,d.162.1.1 108100,108101 1hkuA 358 2.65e+01 c.2.1.4,c.23.12.1 83557,83558 1yw1A 442 2.81e+01 c.1.16.4 124130 2r6gA 381 2.83e+01 1uxjA 309 2.83e+01 c.2.1.5,d.162.1.1 108112,108113 1xs5A 241 2.86e+01 c.94.1.1 115912 1uxkA 309 2.86e+01 c.2.1.5,d.162.1.1 108116,108117 1q5mA 322 3.01e+01 c.1.7.1 104539 1rjmA 339 3.03e+01 c.14.1.3 111826 1q13A 323 3.06e+01 c.1.7.1 111648 1q52A 314 3.07e+01 c.14.1.3 95846 2qahA 303 3.15e+01 1xz0A 279 3.18e+01 b.1.1.2,d.19.1.1 122461,122462 1q1bA 381 3.18e+01 b.40.6.3,c.37.1.12 95562,95563 2o2eA 422 3.22e+01 2awnA 381 3.23e+01 b.40.6.3,c.37.1.12 127459,127460 1onqA 283 3.26e+01 b.1.1.2,d.19.1.1 93365,93366 2r7kA 361 3.38e+01 1i5eA 209 3.38e+01 c.61.1.1 71116 2og5A 357 3.41e+01 3d0cA 314 3.50e+01 2b9mY 365 3.63e+01 1vpeA 398 3.77e+01 c.86.1.1 35453 1agjA 242 3.85e+01 1agjA b.47.1.1 25827 1yacA 208 4.04e+01 1yacA c.33.1.3 31757 2v65A 331 4.10e+01 2pblA 262 4.25e+01 2b8wA 328 4.37e+01 1ofdA 1520 4.42e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2ihr1 365 4.47e+01 1fpmA 557 4.61e+01 c.37.1.10 59945 1dueA 242 4.61e+01 b.47.1.1 76140 1yslA 402 4.69e+01 2hdbA 383 4.73e+01 1b9bA 255 4.84e+01 1amk c.1.1.1 28531 2gqdA 437 4.87e+01 3bkzA 201 4.88e+01 1yrrA 382 4.91e+01 b.92.1.5,c.1.9.10 123935,123936 1mx3A 347 4.93e+01 c.2.1.4,c.23.12.1 79638,79639 2cwqA 137 4.93e+01 a.152.1.4 130931 2d0dA 282 5.03e+01 2db3A 434 5.09e+01 1ovlA 271 5.10e+01 a.123.1.1 87455 2qvbA 297 5.17e+01 1g68A 271 5.25e+01 1btl e.3.1.1 42705 1x9eA 383 5.28e+01 2o2iA 300 5.29e+01 3bieA 202 5.41e+01 2z8xA 617 5.48e+01 2z8zA 617 5.53e+01 1d1gA 168 5.67e+01 1d1gA c.71.1.1 34889 2g3fA 421 5.79e+01 2p53A 382 6.03e+01 1wohA 305 6.12e+01 c.42.1.1 109446 2h4yA 178 6.13e+01 2ds3A 761 6.16e+01 2culA 232 6.35e+01 c.3.1.7 130813 1ii8A 195 6.41e+01 1f2tA c.37.1.12 62417 1nofA 383 6.53e+01 b.71.1.2,c.1.8.3 92020,92021 1gwjA 377 6.62e+01 c.1.4.1 70671 1ck3A 263 6.71e+01 1btl e.3.1.1 42698 2d2iA 380 6.80e+01 2hbzA 178 6.82e+01 3bq8A 148 6.85e+01 1j34A 129 6.89e+01 d.169.1.1 84048 2qbyA 386 7.01e+01 1i0zA 333 7.05e+01 3ldh c.2.1.5,d.162.1.1 61495,61496 1b8pA 329 7.06e+01 1bmdA c.2.1.5,d.162.1.1 30147,42114 1t2fA 333 7.15e+01 c.2.1.5,d.162.1.1 99088,99089 2d0oA 610 7.18e+01 c.8.6.1,c.55.1.6,c.55.1.6 131075,131076,131077 2ppgA 399 7.22e+01 2v7pA 310 7.22e+01 2p3kA 161 7.23e+01 1p9hA 226 7.26e+01 b.81.3.1 94389 1i39A 225 7.32e+01 1ekeA c.55.3.1 61585 1v0eA 666 7.33e+01 b.68.1.2,b.108.1.3 113466,113467 2hbqA 178 7.45e+01 1yt4A 263 7.89e+01 2gudA 121 7.90e+01 b.77.3.1 135732 1htzA 263 7.94e+01 1btl e.3.1.1 61262 2qneA 495 7.97e+01 2nuoA 122 8.00e+01 1ibcA 194 8.00e+01 1pauA c.17.1.1 30997