(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0437
    • gi|168177035|pdb|2JZ5|A_3:82 Chain A, Nmr Solution Structure Of Protein Vpa0419 From Vibrio Parahaemolyticus. Northeast Structural Genomics Target Vpr68 [Taxonomy] 
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAAASSADEGASVAY
   2 --RCSAEETAACCCIDVGTIMDNTDCTASYSCVFDNRVEAEAMLKTLTEKARAV--ESEPCLIEH
   3 ---CSAEETAACCCVDVGTVMDNTDCTASYSCVFDNRAEAEAMLKTLTEKARAV--ESEPCLIEH
   4 --RCSAEETAACCCVDVGTVMDNTDCTASYSCVFENRAEAEAMLKMLTEKARAV--ESEPCLIEH
   5 ---CSAEETAACCCVDVGTVMDNTDCTASYSCVFDNRAEAEAMLKTLTEKARAV--ESDPCLIEH
   6 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFATRAEAEGTLAALTEKARSV--ESEPCQITP
   7 --RCSAEETAACCCVDVGTVMDNTDRTASYSCVFASRHEAEAMLKTLTDKARAV--ESDPCLIEH
   8 --RCSAEETAACCCVDVGTVMDNTDRTASYSCVFASRHEAEAMLKTLTDKARAV--ESDPCLIEH
   9 --RCSAEETAACCCVDVGTVLDNKDCTASYQHVFASHEEAESMLKQLTEKAKSV--ESEPCAIDH
  10 --KCSAQETAACCCVDVGTVMDNTDCTASYSQVFTNQQDAEKMLAALTEKARGV--ESDPCDISS
  11 -VKCKAEESLTCSCVDVGTIIDGSDCTVEVHQFYSTEADANAALERLTKKARDI--ESDPCEIKS
  12 --KCNPEEAKACCCVDVGTIIDGSDCTVEFEQVYASQAQAEEALAYLTEKAKAA--ESDPCEITS
  13 -SKCSADETPVCCCMDVGTIMDNTDCTASYSRVFSKRADAEETLSALTKRARDV--ESDPCEIKS
  14 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQFYSTEADANAALERLTKKARDT--ESDPCEIKS
  15 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFATRAEAEETLAALTEKARSV--ESEPCQITP
  16 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFATRAEAEETLAALTEKARSV--ESEPCQITP
  17 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAAASSADEGASVAY
  18 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQVYSTEADANAALERLTKKARDI--ESDPCEIKS
  19 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAATSSADEGASVAY
  20 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQFYSTEADANAALERLTKKARNT--ESDPCEIKS
  21 -QDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAAASSADEGASVAY
  22 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAATSSADEGVSVAY
  23 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQVYSTEADANAALERLTKKARNI--ESDPCEIKS
  24 -KNDKPVECVGCNTFDVGSILDNSDLKADFDKVYPTRAEAEAALAKLTQKARDT--ETEPCQIQS
  25 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQFYSTEADANAVLERLTKKARNT--ESDPCEIKS
  26 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKSRSV--ESEPCKISP
  27 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQFYSTEADANAALERLMKKARNT--ESDPCEIKS
  28 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQVYSTEADANAALERLTKKARNT--ESDPCEIKS
  29 -TKCSADETPVCCCIDVGTIIDNTDCVASYSRVFENRADAEATLAALTAKAREV--ESEPCQITP
  30 -KSDKPVECVGCNTFDVGSIIDNSERDAKFEKVYETQAEAEQALVKLTQKARDT--ESEPCEITS
  31 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKSRSV--ESEPCKISP
  32 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKITP
  33 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAAASSADEGASVAY
  34 -KRCSTRETAACCCVDVGTILDNGDRTASYSQVFPHQDHAEAMLSHLTDKARAV--ESDPCLIES
  35 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQFYSTEADANVALERLTKKARNI--ESDPCEIKS
  36 --RCSAEETAACCCIDVGTIMDNTDCTASYSCVFGNRADAEAMLKSLTEKARAV--ESEPCLIEH
  37 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKLSRFFATREEAESFMTKLKELAATASSADEGASVAY
  38 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKITP
  39 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKFLRFFATREEAESFMTKLKELAAAASSADEGASVAY
  40 --KYKAEESLTCSCVDVGTIIDGSDCSVEVHQVYSTEADANAALERLIKKARDT--ESDPCEIKS
  41 --KCKADEVQACCCVEIGTIIDGKDCTVDVDYHYDNKGLAQKALDYFTEKARAA--ESEPCRIKS
  42 -NKCSAEETAACCCVDVGTIMDNTDCTASYSNVFGDRSDAEATLAALTEKARAV--ESEPCEIAS
  43 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKISP
  44 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKISP
  45 -SKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKISP
  46 -KSDKPIECVGCNTFDVGSIIDNSERDAKFEKVYATQEQAEAVLAKLVQKARDT--ETDSCEISS
  47 -KDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAATSSADEGASVAY
  48 -VKCKAEESLTCSCVDVGTIIDGSDCSVEVHQFYSTEADANVALERLTKKARDT--ESDPCEIKS
  49 ---------------DVGTIVDNTDCTASYSRVFANRAEAEQTLAALSEKARNV--ESEPCQINP
  50 -KSDKPIECVGCNTFDVGSILNNDELEAKIEKVFAGKEEAEQGLAALTAKARDI--ESEPCKISS
  51 --EESQVCEACGCAGEIGFIIKEGDEVADVTIFAETKDALESELAKYIELAKSVCAGVEYNVSEL
  52 ---NNDVCEACGCAGEIGFIIKEGDEVAEVTVYGNSKALIEAELAKYVELAKQVSSNVEFEASEM
  53 --EQNQVCEACGCAGEMGFIIKEGDDVADVTIFAETKAALEAELAKYIEMATAVCAGVEYNVSEL
  54 --KCTPEETKACCCADVGTIIDNSELSVDFSQVYENETTAQEALAYLTEKARKA--ETESCDIRS
  55 -KNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAALEKFTQKARDV--ESEPCEISS
  56 --------SSSCCSIDVGTIIDNSDCAVNFTQLYTTKEEAEDALAFLTSKARST--ESERCEITS
  57 ---ENEVCEACGCAGEIGFIIREGDDVAEVSLFGSDKAHLEGKLAEYISLAKQVCANVEYEVAPV
  58 ---NNDVCEACGCAGEIGFIIKEGDDVAEVTVYGNSKALIEAEFAKYVELAKQVSSNVEYEASEM
  59 --KCSTNETAACCCVDVGTIIDNEDCKASFSRAFAERQQAESMLARLTEKARAV--ESDPCQIDA
  60 ---ENEVCEACGCAGEIGFIIREGDDVAEVSLFGSDKAHLEGKLAEYISLAKQVCANVEYEVAPV
  61 ---NNDVCEACGCAGEIGFIIKEGDDVAEVTVYGNSKALIETEFAKYVELAKQVSSNVEFEASEL
  62 -KDVVDKCSTKGCAIDVGTIIDNEDCVYRAEKVFPNREEAESTVAAVRERAAAAAPASEPPQVDY
  63 --EQNQVCETCGCAGEMGFIIKEGDDVADVTIFAETKAVLETELAKYIEMATAVCPAVEYNVSEL
  64 ---------------DVGTIMDNSDCTASYSRVFENRAQAEETLAALTEKARGV--ESEPCQITS
  65 ---KNQVCEACGCAGEIGFIIKEGDEVADVTVFAQTKTELESELQKYIELAKSVCADVEYNVSEI
  66 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  67 --TEKPIECVGCNTFDVKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  68 ---ETQVCEACGCAGEIGFIIKEGDDVADVTIYAGSKELLQAEFAKYLELAKAVNENVEYNTTDL
  69 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  70 ----QADCCGGICKPSSTSMFDNADSTIELALVYPTQADAEQGLATLTAKAREV--ESDPCDISS
  71 --EEPTVCDACGVAGEMGFIIKEGDDVAEVQLFSDSKAQLEVELQKYVELAQAVCKNVEFEVSPL
  72 ---------------DVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKITP
  73 ---------------DVGTIMDNSDCTASYSRVFATRAEAEETLAALTEKARSV--ESEPCQITP
  74 ----FQACDACGVSAEMGFIIKEGDDVAEVSIFAQSKVALENEFNNYLALAKEVNANFEYQVSEL
  75 ---------------DVGTIMDNSDCTASYSRVFASRAEAEQTLAALTEKARSV--ESEPCKITP
  76 ---------------DVGTIMDNSDCTASYSRVFANRAEAEQTLAALTEKARSV--ESEPCKISP
  77 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYVYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  78 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  79 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  80 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYIYDSEGQAQEALAFFTQKARDV--ESEPCEIQS
  81 --TEKPIECVGCHIFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  82 --TEKPIECVGCNTFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFIQKARDV--ESEPCEIQS
  83 --TEKPIECIGCNTFDMKSLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  84 --EEYQVCEACGVSGELGFIIKENDDTADVQIFAQGKDALEVELANYLALAKEVNANYKVETTPV
  85 ---ENEVCEACGCAGEIGFIIREGDDVAEVSLFGSDKAHLEGKLAEYISLAKQVYANVEYEVAPV
  86 --EEYQVCDACGVSAEMGFIIKENDDTADVKVFANGKDALEIELSNYLALAKEVNANYKVETTPV
  87 ---QNVPCEACGCSAEMGFVIKEGDDVAEVSIFADNKVLLESEFSNYLALAKEVCAD-----VEH
  88 ---------------EIGFIIKEGDEVADVTIFAETKDALESELAKYIELAKSVCAGVEYNVSEL
  89 ----FQPCDACGVSAEVGFIIKEGDDVAEVSIFAQGKVALENEFNNYLALAKEVNANFEYQASEL
  90 ---QKVAEAHNMCRIKGDSMLDNSAREVVFEAEYDTEKQALNARDYFIQKARDI--ENDPANIES
  91 ---LNETCDSCGCFAEIGTIIGEGDDLMELVIEAATEADARAKLAAYEALAKQV---TAEAMISS
  92 --QQKAAEAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEQAQQAVEFFTEKAKSV--ETEACVIQH
  93 ------------------SLFDNRDCSQVIEYIYDSEEQAQEALAFFTQKARDV--ESEPCEIQS
  94 ----DDICEACGSFVELGSVISDDDTVLVLPFTGKESVAVTALAIKYIDAAKTR---FDSVVVTE
  95 --------------------------------------------KTLTDKARAV--ESDPCLIEH
  96 -------------------------------------------LERLTKKARDT--ESDPCEIKS
  97 -----DTCNDCGSYADIGAVIDEFDTVLTLVRE---GDKAQSELQALAEAAKQR-----FEGVES
  98 ---------------------------------------------------------------TT
  99 -----------------------------------------------------------------


         70        80        90         
         |         |         |         
   1 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
   2 KLEETDGGVRLTVDFTFACQAETMIFQLGLR---
   3 KLEEAEGGVRLTIDFTFACQAETMIFQLGLR---
   4 KLEETEGGVRLTIDFTFACQAETMIFQLGLR---
   5 KLEESEGGVRLTVDFTFACQAETMIFQLGLR---
   6 TFTEESEGVRLDIDFVFACEAETLIFQLGLR---
   7 KLEDVEGGVRLTIDFTFACQAETMIFQLGLR---
   8 KLEDVEGGVRLTIDFTFACQAETMIFQLGLR---
   9 SITNVEGGVELSANFTFSCEAESLIFQLGLR---
  10 SIKPVDGGVELVADFTFACQAETFIFQLGLR---
  11 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  12 DISAVEQGALLKAQFVFSCQAEAMIFQLSTR---
  13 TLTEVEGGVKLDIDFIFACEAETLIFQLGLR---
  14 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  15 TFTEESEGVRLDIDFVFACEAETLIFQLGLR---
  16 TFTEESEGVRLDIDFVFACEAETLIFQLGLR---
  17 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
  18 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  19 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
  20 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  21 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
  22 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
  23 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  24 EINEAEGGFRLKAGFVFSCQAEAVIFQLGTR---
  25 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  26 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  27 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  28 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  29 RFTEEADGVRLDIDFVFACQAETVIFQLGLR---
  30 EIKAVEGGFLLDANFRFSCQAEVVIFQLGTR---
  31 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  32 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  33 KIKDLEGLVELDAAFTFSCQAEMIIFELSLRSLA
  34 QFHQTPAGIQLACRFTFSCQAETMIFQLGLR---
  35 EIVAVENSVQLNASFTFSCQAEAMIFELAN----
  36 KFEEKDGGVCLTIDFTFACQAETMIFQLGLR---
  37 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLG
  38 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  39 KIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA
  40 EIVAVENGVQLNVSFTFSCQAEAMIFELAN----
  41 EIIESAHGAQLKAQFTFSCQAEAMIFQLSTR---
  42 TLEDVDGGVKLDIDFTFSCQVETMIFQLGLR---
  43 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  44 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  45 TFTEESDGVRLDVDFTFACEAEMLIFQLGLR---
  46 NILPVEAGFLLTANFDFSCQAEVVIFQLGTR---
  47 KIRDLEGQVELDAAFTFSCQAEMIIFELSLRS--
  48 EIVAVENGVQLNASFTFSCQAEAMILN-------
  49 TFTDVDGGVQLDIDFVFSCEAESLIFQLGLR---
  50 EITPVDGGYKLTASFEFSCQAEVVIFQLGTRS--
  51 ----TEESKELTARFKFEVSAEKLIFELKTRSLA
  52 ----TEDSTELHARFKFEVSAEKIIFELKTRSLA
  53 ----TEESKELTARFKFEVSAEKLIFELKTRSLA
  54 EIKEVNGNYQLNATFTFSCQAETLIFQLSIR---
  55 EITPIESGFELVAHFKFSCQAEVVIFQLGTR---
  56 EIISTENGFQLTACFKFSYQVESMIFELGMR---
  57 ----ADNATELHARFKFEVSAEKLIFELKTRALA
  58 ----TEESTELHARFKFEVSAEKIIFELKTRSLA
  59 RIDPQDNGFVLDADFTFCCQAETLIFQLGLR---
  60 ----ADNATELHARFKFEVSAEKLIFELKTRALA
  61 ----TEESTELNARFKFEVSAEKIIFELKTRSLA
  62 TIVAAGDAVKLDLSIAFSCQAEKIIFELSLRNL-
  63 ----TEESRELTARFKFEVSAEKLIFELKTRSLA
  64 TFTEEAEGVRLDIDFVFACEAETLIFQLGLR---
  65 ----TEESNQATARFKFEVSAEKLIFELKTRSLA
  66 EITKVDDGYLLKANFTFCCQAELVIFQMR-----
  67 EITKVDDGYLLKANFTFCCQAELVIFQMR-----
  68 ----TDDSTELTARFKFEVSAEKLIFELKSRSL-
  69 EITKVDDGYLLKANFTFCCQAELVIFQMR-----
  70 QISQTEDGFLLQAKFLFSCQAEAVIFQMKLR---
  71 ----EESSKELTARFKFEVSAEKLIFELKTRSLA
  72 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  73 TFTEESDGVRLDIDFVFACEAETLIFQLGLR---
  74 ----TEESTELTARIKFECSAEKLIFELKSRSLA
  75 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  76 TFTEESDGVRLDIDFTFACEAEMLIFQLGLR---
  77 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  78 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  79 EITKLDDGYLLKADFTFCCQAELVIFQMR-----
  80 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  81 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  82 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  83 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  84 ----DENSTELTARIQFECSAEKLIFELRSRSLA
  85 ----ADNATELHARFKFEVSAEKLIFELKTRALA
  86 ----NADSTELTARIQFECSAEKLIFELRSRSLA
  87 SIVITEDEKELHARLKFSCSAEKLIYELKTRSL-
  88 ----TEESKELTARFKFEVSAEKLIFELKTRSLA
  89 ----TEESTELTAHIKFECSAEKLIFELKSRSLA
  90 QITDISNGFRLKMRIVFGCQAEVVLFQMAIR---
  91 ELSQGASGVILKARLQFTCTAEKLIFELRARS--
  92 SISPIEDGFLMQMRIEFSCQAEVVLFQMAV----
  93 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  94 QEITADDLVTLEVTFNFDCTAEKLIFEMGL----
  95 KLEDVEGGVRLTIDFTFACQAETMIFQLGLR---
  96 EIVAVENGVQLNASFTFSCQAEAMIFELAN----
  97 DIKAVEGALE--LRLTFGYSAEKMIFQL------
  98 EITKVDDGYLLKADFTFCCQAELVIFQMR-----
  99 -ITKVDDGYLLKADFTFCCQAELVIFQMR-----