# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.33e-10		
1zpvA	91	6.379	d.58.18.7	125475
2ehbD	143	9.311		
1a7lA	389	9.728	c.94.1.1	35787
2cc6A	68	18.40	d.230.2.1	130218
1anf	370	22.34		
1t6lA	290	22.83	d.131.1.2,d.131.1.2	106574,106575
2zfdB	123	35.38		
1laxA	370	36.02	c.94.1.1	84576
1p9rA	418	39.35	c.37.1.11	94399
1v4pA	157	41.65	d.67.1.2	113533
1ezoA	370	43.80	c.94.1.1	59539
1uliB	187	45.21	d.17.4.4	107923
1y4oA	104	45.46		
1wbaA	175	46.58	b.42.4.1	25591
1k2yX	463	47.45	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1skoB	130	47.62	d.110.7.1	105677
2eenA	183	48.67		
2ew0A	192	49.14	d.310.1.1	132445
2cz8A	69	52.07		
1ru0A	105	53.60	d.74.1.1	111937
1qysA	106	53.76	k.41.1.1	96603
1b5sA	242	54.92	c.43.1.1	32626
1eaf	243	55.03		
1mogA	67	56.33	d.230.2.1	85034
1zndA	174	58.81	b.60.1.1	125380
1v7oA	165	59.59	d.67.1.2	100480
2b95A	106	62.45		
1vetB	125	64.26	d.110.7.1	108554
1div	149	68.54		
1wr2A	238	71.39		
2p35A	259	72.40		
2ohwA	133	78.40		
2qx2A	344	79.00		
1t6sA	162	80.63	a.4.5.60,a.4.5.60	112271,112272
2fqmA	75	80.73		
2ii3A	262	81.12		
2vjeA	64	83.17		
1wznA	252	83.71	c.66.1.43	121525
1gh2A	107	85.39	c.47.1.1	60515
1erw	105	85.99		
1z41A	338	86.25	c.1.4.1	124421