# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jz5A 91 1.37e-15 2ehbD 143 2.057 1dzlA 505 2.506 b.121.6.1 23586 1z41A 338 2.517 c.1.4.1 124421 1eagA 342 2.987 b.50.1.2 26826 1zpvA 91 3.866 d.58.18.7 125475 1vkdA 338 3.967 b.67.2.4 108644 1vhsA 175 4.209 d.108.1.1 100698 2cc6A 68 5.674 d.230.2.1 130218 2zfdB 123 6.698 1nijA 318 7.931 c.37.1.10,d.237.1.1 85741,85742 1u02A 239 8.258 c.108.1.15 107538 1a9eA 277 8.321 b.1.1.2,d.19.1.1 20757,38268 1ms9A 648 12.41 b.29.1.15,b.68.1.1 85088,85089 1dpbA 243 13.71 c.43.1.1 32618 1wy2A 351 14.08 2v9lA 274 14.62 1b1yA 500 15.41 c.1.8.1 28796 1e5mA 416 15.59 c.95.1.1,c.95.1.1 58973,58974 1v33A 366 15.81 d.264.1.1 100278 2izpA 303 16.31 a.250.1.1 137826 2q18X 293 16.52 2jo6A 113 19.15 3bwaA 276 19.58 2hq4A 161 20.39 1sczA 233 20.50 c.43.1.1 98802 1uliB 187 20.59 d.17.4.4 107923 1skoB 130 20.69 d.110.7.1 105677 1vpbA 451 21.73 d.283.1.1 113950 2b95A 106 22.55 2ys3A 137 23.05 1x1iA 752 24.17 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2eiyA 308 25.26 3bsoA 510 25.39 1xtmA 175 25.41 1mogA 67 26.69 d.230.2.1 85034 1xo8A 151 27.54 b.1.25.1 115698 2qezA 455 28.28 2sak 121 28.60 3prnA 289 28.92 f.4.3.1 43761 2cz8A 69 29.06 1miuA 738 29.14 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1y56A 493 29.37 1e7uA 961 29.38 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1sfsA 240 31.16 c.1.8.8 98846 1eaf 243 31.64 1wrvA 308 31.74 1qysA 106 32.11 k.41.1.1 96603 2e4tA 519 32.18 1anf 370 38.09 1ni5A 433 38.34 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1t6lA 290 38.72 d.131.1.2,d.131.1.2 106574,106575 2d2rA 245 39.71 2ghaA 382 40.01 2eenA 183 40.53 1a1oA 276 42.49 b.1.1.2,d.19.1.1 20751,38265 2rkvA 451 43.26 1qba 858 43.41 1qq4A 198 44.59 b.47.1.1 25768 2av4A 162 44.68 2dqaA 124 44.85 1zsoA 164 44.87 b.166.1.1 125610 1x1fA 149 45.29 b.55.1.1 121579 1z5yE 149 46.22 c.47.1.10 124498 2jesA 503 46.38 1b5sA 242 47.30 c.43.1.1 32626 2ozlA 365 47.38 1wbaA 175 49.79 b.42.4.1 25591 1y4oA 104 51.23 1chmA 401 51.47 c.55.2.1,d.127.1.1 33545,41142 1zndA 174 52.59 b.60.1.1 125380 2ob3A 330 53.20 2a67A 167 54.38 1z3eB 73 56.85 a.60.3.1 124401 2hhjA 267 58.64 c.60.1.1 136497 1div 149 62.01 2vafA 378 63.42 1d8wA 426 63.68 c.1.15.2 29394 2zivA 311 64.05 1hjsA 332 64.53 c.1.8.3 83492 1ybvA 283 66.46 c.2.1.2 29948 1g71A 347 68.86 d.264.1.1 43268 1b94A 244 69.98 c.52.1.2 33250 1gh2A 107 70.01 c.47.1.1 60515 1xviA 275 71.38 c.108.1.10 116088 2e6rA 92 71.78 1x89A 178 73.48 b.60.1.1 121799 1rlwA 126 73.56 b.7.1.1 23177 1a1nA 276 74.04 b.1.1.2,d.19.1.1 20755,38267 1nbaA 264 74.87 c.33.1.3 31753 2f9sA 151 78.37 c.47.1.10 133168 1vetB 125 78.80 d.110.7.1 108554 1jk7A 323 79.10 d.159.1.3 63144 1yaiA 151 79.62 b.1.8.1 22289 2nzxA 371 79.85 2reeA 224 79.87 1qycA 308 82.91 c.2.1.2 96581 2v5jA 287 83.46 1cauB 184 84.28 b.82.1.2 28103 2fjtA 182 85.29 2qebA 145 85.86 2arrA 382 86.12 2q7eA 291 86.89 2thiA 379 87.36 c.94.1.1 35794 1j27A 102 87.58 d.58.50.1 90778 1b9kA 238 88.05 b.1.10.1,d.105.1.1 22315,40791