# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	2.87e-11		
2cc6A	68	10.25	d.230.2.1	130218
2ehbD	143	10.42		
1xo8A	151	13.84	b.1.25.1	115698
1zpvA	91	15.83	d.58.18.7	125475
1mogA	67	24.74	d.230.2.1	85034
2zfdB	123	28.31		
1a7lA	389	37.50	c.94.1.1	35787
1uliB	187	40.21	d.17.4.4	107923
2cz8A	69	45.94		
1t6lA	290	47.64	d.131.1.2,d.131.1.2	106574,106575
2b95A	106	52.68		
1y4oA	104	54.80		
1vhsA	175	56.56	d.108.1.1	100698
3bxoA	239	58.32		
1wbaA	175	60.43	b.42.4.1	25591
3bkpA	232	71.95		
1aqb	183	76.36		
1ukkA	142	78.16	d.227.1.1	99491
2jmkA	111	78.70		
2gdnA	267	81.85		
1b8eA	162	84.89	b.60.1.1	59077
1v4pA	157	88.47	d.67.1.2	113533
2ew0A	192	89.34	d.310.1.1	132445