# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.65e-11		
2ehbD	143	7.826		
1zpvA	91	15.85	d.58.18.7	125475
2cc6A	68	17.44	d.230.2.1	130218
1xo8A	151	26.82	b.1.25.1	115698
1y4oA	104	27.83		
2zfdB	123	30.38		
1a7lA	389	42.12	c.94.1.1	35787
1uliB	187	42.14	d.17.4.4	107923
2cz8A	69	47.69		
2b95A	106	47.98		
1mogA	67	48.00	d.230.2.1	85034
1vhsA	175	55.39	d.108.1.1	100698
1div	149	65.31		
1wbaA	175	65.86	b.42.4.1	25591
2ew0A	192	74.06	d.310.1.1	132445
1b94A	244	75.73	c.52.1.2	33250
2fqmA	75	76.19		
2q5wD	77	78.01		
1b96A	244	78.08	c.52.1.2	33268
1x1fA	149	80.84	b.55.1.1	121579
1j27A	102	81.14	d.58.50.1	90778
1ykdA	398	82.25		
1v4pA	157	82.73	d.67.1.2	113533
1b97A	244	83.20	c.52.1.2	33252
1p9rA	418	86.17	c.37.1.11	94399
1eaf	243	89.67