# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 8.15e-12 2yxyA 115 6.80e-01 1wr2A 238 9.57e-01 2qx2A 344 1.45e+00 1wwrA 171 1.78e+00 c.97.1.2 121366 2f6lA 166 2.12e+00 a.130.1.4 133049 2fp1A 166 2.29e+00 a.130.1.4 133891 1irsA 112 2.43e+00 1qqgA b.55.1.2 26991 1wwmA 190 3.12e+00 a.132.1.3 121363 2o5aA 125 4.16e+00 2cz8A 69 5.96e+00 1fnoA 417 6.01e+00 d.58.19.1,c.56.5.4 70145,75841 1sf9A 128 6.54e+00 b.34.15.1 98831 1vixA 420 6.71e+00 c.56.5.4,d.58.19.1 100777,100778 1kb9F 74 7.66e+00 f.28.1.1 77321 1yb3A 175 8.40e+00 d.296.1.2 122869 1h3lA 87 9.75e+00 a.177.1.1 76639 1qysA 106 1.01e+01 k.41.1.1 96603 1lqaA 346 1.12e+01 c.1.7.1 84674 1jkeA 145 1.18e+01 c.110.1.1 66791 1a6zA 275 1.38e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 3cx5F 146 1.49e+01 2i5uA 83 1.51e+01 2cqeA 98 1.51e+01 g.66.1.1,g.66.1.1 130720,130721 2q8uA 336 1.51e+01 1dpgA 485 1.58e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1vq2A 193 1.78e+01 c.97.1.2 114004 1p42A 270 1.82e+01 d.14.1.7,d.14.1.7 87754,87755 2r8cA 426 1.83e+01 2fjlA 150 1.94e+01 b.55.1.1 133611 2grcA 129 1.97e+01 2bsjA 133 2.06e+01 1p1lA 102 2.19e+01 d.58.5.2 87695 1cg2A 393 2.23e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1mqvA 125 2.24e+01 a.24.3.2 79415 2p10A 286 2.31e+01 2oocA 113 2.34e+01 2bjdA 101 2.45e+01 1d3uA 181 2.49e+01 1ytbA d.129.1.1,d.129.1.1 41290,41291 1s3qA 173 2.51e+01 a.25.1.1 118848 1t3lA 337 2.55e+01 b.34.2.1,c.37.1.1 106358,106359 2nlyA 245 2.59e+01 c.6.2.7 138364 1zr6A 503 2.62e+01 1w4vA 119 2.64e+01 1rtrA 301 2.67e+01 a.128.1.1 97820 1r7lA 110 2.68e+01 d.277.1.1 104837 1kjvA 284 2.69e+01 b.1.1.2,d.19.1.1 77421,77422 2hiqA 113 2.75e+01 d.58.4.12 136529 1z2lA 423 2.78e+01 c.56.5.4,d.58.19.1 124383,124384 2fipA 115 2.80e+01 1usmA 80 2.89e+01 d.74.1.1 99876 1h6gA 256 3.04e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1iq8A 582 3.04e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1txjA 171 3.16e+01 b.88.1.2 107424 1ttwA 138 3.38e+01 d.198.1.1 107308 1wd6A 123 3.46e+01 d.58.4.12 114525 1yspA 181 3.55e+01 1l8dA 112 3.56e+01 h.4.12.1 73687 1y6xA 93 3.63e+01 a.204.1.4 122676 1zpwX 90 3.66e+01 d.58.58.1 125478 2jyaA 106 3.81e+01 2z1dA 372 3.87e+01 3caxA 369 3.94e+01 1a3wA 500 4.03e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 2qn6B 93 4.07e+01 1irxA 523 4.08e+01 a.97.1.2,c.26.1.1 71378,71379 2go3A 267 4.20e+01 d.14.1.7,d.14.1.7 135422,135423 1a22A 180 4.34e+01 1huw a.26.1.1 16833 1k1aA 241 4.39e+01 d.211.1.1 67992 2i76A 276 4.42e+01 1s2wA 295 4.45e+01 c.1.12.7 98407 5csmA 256 4.61e+01 5csmA a.130.1.2 19494 1kp8A 547 4.62e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1csmA 256 4.69e+01 5csmA a.130.1.2 19495 1a7vA 125 4.72e+01 1cpq a.24.3.2 16562 1bouA 139 4.76e+01 1bouA a.88.1.1 18521 1aisA 182 4.76e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1kr4A 125 4.87e+01 d.58.5.2 72889 1wa3A 205 4.91e+01 c.1.10.1 120802 2o66A 135 5.04e+01 1h03P 125 5.15e+01 g.18.1.1,g.18.1.1 83411,83412 2f05A 105 5.24e+01 a.59.1.1 132651 1ri7A 171 5.29e+01 a.4.5.32,d.58.4.2 97504,97505 2cyyA 151 5.44e+01 a.4.5.32,d.58.4.2 131028,131029 1pszA 303 5.49e+01 1toaA c.92.2.2 35600 1j7gA 144 5.50e+01 c.110.1.1 84130 1u6lA 149 5.52e+01 d.32.1.7 113067 2kfnA 605 5.53e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 2v6xA 85 5.57e+01 1hgxA 183 5.89e+01 1tc1A c.61.1.1 34027 3bevA 274 5.91e+01 2b25A 336 5.98e+01 c.66.1.13 127699 2bhoA 130 6.00e+01 2qqyA 149 6.02e+01 1ru0A 105 6.05e+01 d.74.1.1 111937 2chcA 170 6.13e+01 1d8yA 605 6.15e+01 1xwl c.55.3.5,e.8.1.1 33684,42977 2j13A 247 6.22e+01 c.6.2.3 137934 2dbgA 103 6.25e+01 1icxA 155 6.29e+01 d.129.3.1 71191 2g6yA 217 6.33e+01 2cu5A 129 6.33e+01 2gutA 77 6.34e+01 1pczA 191 6.37e+01 1ytbA d.129.1.1,d.129.1.1 41292,41293 2joeA 139 6.37e+01 2uubJ 105 6.37e+01 d.58.15.1 139941 1r6oC 106 6.42e+01 d.45.1.2 118738 1u00A 227 6.58e+01 a.8.4.1,b.130.1.1 112900,112901 1nswA 105 6.70e+01 c.47.1.1 92097 1gh6A 114 6.76e+01 a.2.3.1 65191 2dtcA 126 6.81e+01 2ie4A 589 6.87e+01 a.118.1.2 137291 2ywlA 180 6.89e+01 1yarO 237 6.90e+01 1k0fA 277 6.91e+01 c.92.2.2 71974 1ay7B 89 7.17e+01 1ay7B c.9.1.1 30836 1k6kA 143 7.21e+01 a.174.1.1 77274 1klnA 605 7.28e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 2or0A 414 7.35e+01 1u55A 188 7.68e+01 d.278.1.1 107677 1pjqA 457 7.70e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1owfA 99 7.80e+01 a.55.1.1 87487 1hx2A 60 7.84e+01 1hx2A g.22.1.2 44898 2dbbA 151 7.87e+01 2fncA 381 7.91e+01 1naqA 112 7.96e+01 d.58.5.2 91761