# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 1.96e-11 2cz8A 69 1.04e+00 2bo9B 222 4.36e+00 d.17.1.5,d.17.1.5 128898,128899 1wr2A 238 5.68e+00 2bjdA 101 5.98e+00 1vqoL 165 7.50e+00 c.12.1.1 120373 1zeqX 84 7.56e+00 1jj2K 164 8.31e+00 1ffkJ c.12.1.1 63096 3bevA 274 9.62e+00 1we0A 187 1.23e+01 c.47.1.10 120930 2a5yB 549 1.42e+01 2yxyA 115 1.75e+01 1zb9A 143 1.98e+01 1y23A 145 2.09e+01 d.13.1.1 116394 1sl8A 191 2.13e+01 a.39.1.5 112099 2i5uA 83 2.25e+01 1kjvA 284 2.29e+01 b.1.1.2,d.19.1.1 77421,77422 2fipA 115 2.31e+01 2f6lA 166 2.39e+01 a.130.1.4 133049 1qysA 106 2.45e+01 k.41.1.1 96603 1irsA 112 2.50e+01 1qqgA b.55.1.2 26991 2fp1A 166 2.56e+01 a.130.1.4 133891 2retB 175 2.57e+01 1dpgA 485 2.82e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1khcA 147 2.95e+01 b.34.9.2 68608 2b95A 106 2.99e+01 1owxA 121 3.22e+01 d.58.7.1 87494 2r8cA 426 3.34e+01 1up8A 598 3.50e+01 a.111.1.2 99710 1b2sD 90 3.53e+01 1ay7B c.9.1.1 30837 2qcpX 80 3.57e+01 1vs3A 249 3.65e+01 1fzrA 138 3.76e+01 1fzrA c.52.1.17 33336 2vsgA 358 3.85e+01 2vsgA h.4.1.1 45780 1b3sD 90 4.17e+01 1ay7B c.9.1.1 30846 2vjxA 846 4.19e+01 1v98A 140 4.20e+01 1xxgA 233 4.20e+01 1a6zA 275 4.27e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 1eqtA 68 4.34e+01 1b3aA d.9.1.1 37412 2vr4A 846 4.36e+01 2a6sA 84 4.41e+01 d.298.1.1 126305 1y4oA 104 4.58e+01 1qhbA 596 4.62e+01 1qhbA a.111.1.2 19055 1uldA 150 4.69e+01 b.29.1.3 99545 3b4tA 262 4.79e+01 1b2uD 90 4.79e+01 1ay7B c.9.1.1 30843 2peqA 134 4.81e+01 2hj0A 519 4.86e+01 2ovsA 118 4.92e+01 1m0dA 138 4.92e+01 c.52.1.17 74354 2ywlA 180 5.12e+01 2vh3A 113 5.20e+01 2f05A 105 5.24e+01 a.59.1.1 132651 1utxA 66 5.25e+01 a.35.1.3 108034 2rdkA 109 5.28e+01 2a2pA 129 5.31e+01 c.47.1.23 126051 2cvjA 180 5.32e+01 2p3hA 101 5.34e+01 1a79A 171 5.36e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 2qiyA 154 5.39e+01 2hz5A 106 5.40e+01 1in0A 163 5.42e+01 d.58.49.1,d.58.49.1 83694,83695 1mqvA 125 5.46e+01 a.24.3.2 79415 1a3wA 500 5.61e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1l8dA 112 5.71e+01 h.4.12.1 73687 1b97A 244 5.78e+01 1rvaA c.52.1.2 33252 1b3aA 67 5.80e+01 1b3aA d.9.1.1 37410 1ay7B 89 5.86e+01 1ay7B c.9.1.1 30836 1w4vA 119 6.10e+01 1t6lA 290 6.21e+01 d.131.1.2,d.131.1.2 106574,106575 1s2wA 295 6.48e+01 c.1.12.7 98407 2j4xA 213 6.55e+01 1sx5A 244 6.72e+01 c.52.1.2 99023 1e0zA 128 6.79e+01 1awd d.15.4.1 59153 2f1kA 279 6.89e+01 a.100.1.12,c.2.1.6 132772,132773 2j01E 206 7.00e+01 1eonA 245 7.09e+01 1rvaA c.52.1.2 33238 1vq2A 193 7.21e+01 c.97.1.2 114004 1b94A 244 7.26e+01 1rvaA c.52.1.2 33250 1f45B 197 7.29e+01 1f45B a.26.1.1 59642 1y7rA 133 7.32e+01 d.108.1.1 122716 1fjgJ 105 7.50e+01 1fjfJ d.58.15.1 39330 2v6xA 85 7.91e+01 1xhdA 173 7.93e+01 b.81.1.5 115295 1kyaA 499 7.93e+01 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1udsA 255 7.93e+01 d.14.1.4,d.101.1.1 99219,99220