# List of top-scoring protein chains for T0437.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 3.13e-12 1fi8A 228 2.35e-01 5ptp b.47.1.2 26374 1nwaA 203 1.09e+00 d.58.28.1 86295 1nwvA 129 5.84e+00 g.18.1.1,g.18.1.1 86304,86305 2fsvC 203 7.75e+00 c.31.1.4 134041 2h6bA 250 7.88e+00 1vgyA 393 8.01e+00 c.56.5.4,d.58.19.1 100620,100621 1im3D 95 8.28e+00 1im3D b.1.18.5 62568 1u2gC 203 8.61e+00 c.31.1.4 119484 1pqnA 127 8.95e+00 c.47.1.8 95025 1qgvA 142 1.06e+01 1qgvA c.47.1.8 33056 1suiA 247 1.24e+01 c.66.1.1 119049 1nxcA 478 1.27e+01 a.102.2.1 92293 1pnoA 180 1.41e+01 c.31.1.4 94953 2fipA 115 1.44e+01 2fioA 123 1.47e+01 2av4A 160 1.47e+01 2cz8A 69 1.54e+01 2v18A 68 1.66e+01 2ux9A 69 1.72e+01 2cse1 1267 1.75e+01 1h98A 78 1.79e+01 d.58.1.2 65743 2v19A 68 1.80e+01 1tme1 274 1.90e+01 2mev1 1js3A 486 1.96e+01 c.67.1.6 67215 3bptA 363 1.96e+01 1m11R 243 1.99e+01 i.6.1.1 74366 1ok3A 254 2.05e+01 g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 93208,93209,93210,93211 2c8iE 316 2.25e+01 g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 130105,130106,130107,130108 1kcgC 178 2.36e+01 d.19.1.1 68440 2oorC 174 2.48e+01 c.31.1.4 139175 1xltC 174 2.51e+01 c.31.1.4 122126 1e0zA 128 2.61e+01 1awd d.15.4.1 59153 2i39A 137 2.85e+01 2bo9B 222 3.21e+01 d.17.1.5,d.17.1.5 128898,128899 1r0vA 305 3.26e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2gjwA 313 3.34e+01 c.52.2.1,c.52.2.1,d.75.1.1,d.75.1.1 135295,135296,135297,135298 2h6cA 232 3.37e+01 1upnE 129 3.38e+01 g.18.1.1,g.18.1.1 99764,99765 1yycA 174 3.61e+01 2yxyA 115 3.69e+01 1gaoA 106 3.72e+01 1a6l d.58.1.2 38977 1dbrA 231 3.92e+01 1qk3A c.61.1.1 34041 1qk5A 233 4.04e+01 1qk3A c.61.1.1 34035 1awcB 153 4.14e+01 1bd8 d.211.1.1 19156 1fsgA 233 4.18e+01 1qk3A c.61.1.1 34029 2v2kA 105 4.36e+01 2olgA 278 4.41e+01 1pc5A 107 4.52e+01 d.58.1.2 94429 1h03P 125 4.60e+01 g.18.1.1,g.18.1.1 83411,83412 1c3mA 147 4.64e+01 1jotA b.77.3.1 27983 2corA 79 4.65e+01 g.39.1.3,g.39.1.3 130681,130682 1udoA 255 4.74e+01 d.14.1.4,d.101.1.1 99215,99216 1udqA 255 4.81e+01 d.14.1.4,d.101.1.1 99217,99218 1udnA 255 4.82e+01 d.14.1.4,d.101.1.1 99213,99214 1udsA 255 4.85e+01 d.14.1.4,d.101.1.1 99219,99220 2gy9H 127 5.04e+01 d.140.1.1 135832 1s03G 129 5.08e+01 d.140.1.1 105144 1vs5H 130 5.15e+01 d.140.1.1 120489 1s1iU 126 5.17e+01 i.1.1.1 105195 1jj2K 164 5.53e+01 1ffkJ c.12.1.1 63096 1vqoL 165 5.54e+01 c.12.1.1 120373 2g6yA 217 5.55e+01 1h2pP 125 5.61e+01 g.18.1.1,g.18.1.1 83466,83467 2ogeA 399 5.66e+01 1gvcA 157 5.69e+01 c.94.1.2 65607 2dgeA 105 5.72e+01 1gv8A 159 5.73e+01 c.94.1.2 65606 3cj8A 236 5.76e+01 2uxeA 117 5.79e+01 2ikbA 167 5.79e+01 2g3oA 220 5.86e+01 1b0vA 106 5.87e+01 1a6l d.58.1.2 38982 1frmA 106 5.90e+01 d.58.1.2 38973 2i5uA 83 5.98e+01 2is5A 166 6.13e+01 1wteA 272 6.69e+01 c.52.1.29 114876 1g6bA 106 6.78e+01 1a6l d.58.1.2 38963 1n35A 1267 7.18e+01 e.8.1.4 79935 3b4tA 262 7.48e+01 2cknA 95 7.48e+01 1t94A 459 7.60e+01 d.240.1.1,e.8.1.7 106701,106702 2ar9A 278 7.63e+01 2oh2A 508 7.68e+01 2r8cA 426 7.69e+01 1nw9B 277 7.78e+01 c.17.1.1 86294 1jxqA 284 7.87e+01 c.17.1.1 67426 1a79A 171 7.99e+01 1a79A c.52.2.1,d.75.1.1 33340,39739