# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 7.11e-12 1zg2A 107 3.12e+00 2ux9A 69 4.41e+00 2cz8A 69 4.56e+00 1qfmA 710 4.71e+00 1qfmA b.69.7.1,c.69.1.4 27673,34641 2obdA 476 4.84e+00 1h2wA 710 5.02e+00 b.69.7.1,c.69.1.4 76596,76597 1u55A 188 5.35e+00 d.278.1.1 107677 2jamA 304 6.12e+00 1o6gA 710 6.36e+00 b.69.7.1,c.69.1.4 81087,81088 1yx2A 365 7.54e+00 1k2yX 463 8.21e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1p5dX 463 8.78e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2nlrA 234 9.92e+00 2nlrA b.29.1.11 24344 1t7vA 278 1.07e+01 b.1.1.2,d.19.1.1 112302,112303 1dssG 333 1.12e+01 1dssG c.2.1.3,d.81.1.1 30022,39937 2dkhA 639 1.16e+01 1u8fO 335 1.27e+01 c.2.1.3,d.81.1.1 119626,119627 1fnoA 417 1.29e+01 d.58.19.1,c.56.5.4 70145,75841 1r9wA 145 1.39e+01 d.89.1.2 97264 1a6zA 275 1.42e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 2gpyA 233 1.44e+01 2fjlA 150 1.46e+01 b.55.1.1 133611 1jjeA 222 1.47e+01 1a7tA d.157.1.1 63117 2oap1 511 1.50e+01 2gcoA 201 1.55e+01 1jl2A 156 1.59e+01 c.55.3.1 66822 1w2iA 91 1.63e+01 d.58.10.1 109127 2cstA 411 1.63e+01 1ajsA c.67.1.1 34273 1h6vA 499 1.69e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1r7lA 110 1.83e+01 d.277.1.1 104837 2bjdA 101 1.88e+01 1kmqA 184 1.88e+01 c.37.1.8 84412 1tx4B 178 1.96e+01 1ctqA c.37.1.8 32045 2yxyA 115 1.98e+01 1ko3A 230 1.99e+01 d.157.1.1 90974 2qx2A 344 2.05e+01 1skoB 130 2.19e+01 d.110.7.1 105677 2rn2 155 2.20e+01 2rn2 3pcgM 238 2.22e+01 3pchM b.3.6.1 22742 1ww7A 160 2.23e+01 1u58A 253 2.24e+01 2rb9A 334 2.26e+01 1u5rA 348 2.37e+01 d.144.1.7 113050 1vetB 125 2.40e+01 d.110.7.1 108554 2jyaA 106 2.41e+01 1n3yA 198 2.44e+01 c.62.1.1 79976 1z57A 339 2.53e+01 1k5nA 276 2.55e+01 b.1.1.2,d.19.1.1 77266,77267 1p3dA 475 2.66e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2r2zA 93 2.70e+01 1pqnA 127 2.71e+01 c.47.1.8 95025 2hyxA 352 2.75e+01 2asfA 137 2.86e+01 b.45.1.1 127253 2b25A 336 2.93e+01 c.66.1.13 127699 1jjtA 228 2.95e+01 1a7tA d.157.1.1 63139 2dtcA 126 3.02e+01 3blcA 330 3.10e+01 2fipA 115 3.14e+01 2nvnA 122 3.14e+01 d.18.1.3 138633 1oa4A 222 3.17e+01 b.29.1.11 86731 2cdnA 201 3.21e+01 c.37.1.1 130289 2pptA 155 3.46e+01 1vixA 420 3.46e+01 c.56.5.4,d.58.19.1 100777,100778 1aisA 182 3.48e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2iykA 162 3.51e+01 2calA 154 3.58e+01 2fb6A 117 3.59e+01 3bevA 274 3.63e+01 1gydB 315 3.65e+01 b.67.2.1 70751 1eaf 243 3.71e+01 1eaf 1e30A 155 3.75e+01 1rcy b.6.1.1 23016 2z1uA 343 3.84e+01 1wbiA 129 3.91e+01 1gyhA 318 4.00e+01 b.67.2.1 70757 1rcy 151 4.04e+01 1rcy 2sak 121 4.13e+01 2sak 2sakA 121 4.13e+01 d.15.5.1 37711 1iujA 106 4.15e+01 d.58.4.5 90701 1is3A 135 4.15e+01 b.29.1.3 76773 2zfzA 79 4.21e+01 2qikA 285 4.29e+01 2v2fF 390 4.33e+01 2ikkA 173 4.38e+01 1dpbA 243 4.64e+01 c.43.1.1 32618 2uvjA 408 4.79e+01 2pvpA 367 5.02e+01 2rgyA 290 5.06e+01 1qzrA 418 5.07e+01 d.14.1.3,d.122.1.2 96659,96660 1qgvA 142 5.17e+01 1qgvA c.47.1.8 33056 1pvgA 418 5.31e+01 d.14.1.3,d.122.1.2 95161,95162 2olnA 397 5.38e+01 2bvpA 276 5.39e+01 b.1.1.2,d.19.1.1 129291,129292 2c5wB 385 5.43e+01 e.3.1.1 129958 2r41A 110 5.43e+01 1zb9A 143 5.44e+01 2dumA 170 5.59e+01 1vqoU 66 5.72e+01 g.39.1.6 120382 2g2nA 114 5.75e+01 2jh1A 246 5.81e+01 2ptfA 233 5.83e+01 1pyaB 228 5.90e+01 1pyaB 1ijbA 202 5.96e+01 c.62.1.1 71229 1dq3A 454 5.99e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2adbA 148 6.02e+01 d.58.7.1 126581 1iooA 196 6.04e+01 d.124.1.1 71250 1vgjA 184 6.04e+01 1kjvA 284 6.05e+01 b.1.1.2,d.19.1.1 77421,77422 1xkzA 255 6.13e+01 e.3.1.1 115426 2j58A 359 6.18e+01 3bs6A 280 6.19e+01 2z1eA 342 6.51e+01 2gpzA 111 6.62e+01 3b8mA 280 6.65e+01 1yd6A 99 6.80e+01 2dqaA 124 7.03e+01 2rgxA 206 7.06e+01 1xh3A 276 7.24e+01 b.1.1.2,d.19.1.1 115287,115288 3bwaA 276 7.24e+01 2cc6A 68 7.35e+01 d.230.2.1 130218 1p1lA 102 7.56e+01 d.58.5.2 87695 2qb7A 397 7.82e+01 1b24A 188 7.86e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 2i39A 137 7.92e+01 1a1oA 276 7.94e+01 1agdA b.1.1.2,d.19.1.1 20751,38265 2jigA 224 7.95e+01