# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 2.36e-12 1wr2A 238 6.57e-01 2o5aA 125 7.95e-01 2yxyA 115 8.49e-01 2qx2A 344 1.54e+00 1irsA 112 1.96e+00 1qqgA b.55.1.2 26991 1vixA 420 1.98e+00 c.56.5.4,d.58.19.1 100777,100778 1fnoA 417 2.08e+00 d.58.19.1,c.56.5.4 70145,75841 1kb9F 74 3.03e+00 f.28.1.1 77321 2cz8A 69 4.05e+00 2ux9A 69 4.34e+00 1wwrA 171 4.41e+00 c.97.1.2 121366 1h3lA 87 4.43e+00 a.177.1.1 76639 1h98A 78 5.01e+00 d.58.1.2 65743 1jkeA 145 5.17e+00 c.110.1.1 66791 2fp1A 166 5.32e+00 a.130.1.4 133891 1ay7B 89 5.55e+00 1ay7B c.9.1.1 30836 2f6lA 166 5.56e+00 a.130.1.4 133049 2fjlA 150 5.62e+00 b.55.1.1 133611 1iq8A 582 5.71e+00 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1sf9A 128 5.77e+00 b.34.15.1 98831 1mqvA 125 6.38e+00 a.24.3.2 79415 3cx5F 146 6.98e+00 2q8pA 260 7.01e+00 1usmA 80 7.50e+00 d.74.1.1 99876 1ttwA 138 9.53e+00 d.198.1.1 107308 1r6oC 106 9.82e+00 d.45.1.2 118738 2fipA 115 1.03e+01 1yb3A 175 1.05e+01 d.296.1.2 122869 1a6zA 275 1.07e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 1t4yA 105 1.17e+01 c.47.1.15 112248 2i76A 276 1.30e+01 2r8cA 426 1.30e+01 1r7lA 110 1.31e+01 d.277.1.1 104837 1p1lA 102 1.38e+01 d.58.5.2 87695 1wwmA 190 1.46e+01 a.132.1.3 121363 1rtrA 301 1.49e+01 a.128.1.1 97820 5csmA 256 1.64e+01 5csmA a.130.1.2 19494 2i5uA 83 1.68e+01 1vq2A 193 1.79e+01 c.97.1.2 114004 2bsjA 133 1.82e+01 1ez3A 127 1.87e+01 1dn1B a.47.2.1 17768 1s2wA 295 1.88e+01 c.1.12.7 98407 1t3lA 337 1.95e+01 b.34.2.1,c.37.1.1 106358,106359 1qysA 106 1.96e+01 k.41.1.1 96603 1z2lA 423 2.02e+01 c.56.5.4,d.58.19.1 124383,124384 1yspA 181 2.10e+01 2jyaA 106 2.11e+01 1kjvA 284 2.20e+01 b.1.1.2,d.19.1.1 77421,77422 1k2yX 463 2.20e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2grcA 129 2.26e+01 2pspA 106 2.30e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 1kq6A 141 2.30e+01 d.189.1.1 91020 1j7gA 144 2.33e+01 c.110.1.1 84130 1s94A 180 2.38e+01 a.47.2.1 98738 2qn6B 93 2.42e+01 2ogwA 310 2.45e+01 1h5wA 309 2.46e+01 e.27.1.1 65635 1vjqA 79 2.47e+01 k.43.1.1 100830 1lqaA 346 2.49e+01 c.1.7.1 84674 1zr6A 503 2.61e+01 2c29D 337 2.61e+01 2oqzA 223 2.63e+01 b.100.1.1 139255 1ri7A 171 2.66e+01 a.4.5.32,d.58.4.2 97504,97505 2cyyA 151 2.69e+01 a.4.5.32,d.58.4.2 131028,131029 2gutA 77 2.71e+01 1kid 203 2.75e+01 1derA 2cu5A 129 2.85e+01 2fdn 55 2.85e+01 2fdn 2q24A 194 2.87e+01 1kidA 203 2.89e+01 c.8.5.1 30771 1r6uA 437 2.91e+01 c.26.1.1 97163 2j13A 247 2.94e+01 c.6.2.3 137934 1yw1A 442 2.95e+01 c.1.16.4 124130 2iykA 162 2.97e+01 2v6xA 85 2.99e+01 1kr4A 125 3.02e+01 d.58.5.2 72889 1pqzA 238 3.09e+01 b.1.1.2,d.19.1.1 104297,104298 2uubJ 105 3.09e+01 d.58.15.1 139941 1vpqA 273 3.16e+01 c.1.32.1 113974 1icxA 155 3.16e+01 d.129.3.1 71191 1kp8A 547 3.18e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1h03P 125 3.24e+01 g.18.1.1,g.18.1.1 83411,83412 2fdnA 55 3.28e+01 d.58.1.1 38944 2dbbA 151 3.30e+01 1vplA 256 3.31e+01 c.37.1.12 113966 1mkmA 249 3.40e+01 a.4.5.33,d.110.2.2 79242,79243 1cg2A 393 3.44e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1pymA 295 3.45e+01 1pymA c.1.12.7 29308 1w4vA 119 3.47e+01 1ru0A 105 3.55e+01 d.74.1.1 111937 1aisA 182 3.65e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1h6gA 256 3.71e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 2prsA 284 3.77e+01 1k3sA 113 3.92e+01 d.198.1.1 68120 2phzA 311 3.92e+01 2cstA 411 4.01e+01 1ajsA c.67.1.1 34273 2v2kA 105 4.10e+01 2q8uA 336 4.21e+01 1s3qA 173 4.23e+01 a.25.1.1 118848 2dvzA 314 4.29e+01 2joeA 139 4.49e+01 1q1aA 289 4.61e+01 c.31.1.5 95561 2ebbA 101 4.67e+01 2hgsA 474 4.72e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1k1aA 241 4.74e+01 d.211.1.1 67992 1lucB 324 4.79e+01 1lucA c.1.16.1 29548 1tvlA 454 4.86e+01 c.1.16.4 107366 1p5dX 463 4.95e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1zbmA 280 5.02e+01 c.94.1.1 124858 2bs2B 241 5.07e+01 a.1.2.1,d.15.4.2 129033,129034 1w2iA 91 5.09e+01 d.58.10.1 109127 2bjdA 101 5.13e+01 1qgvA 142 5.18e+01 1qgvA c.47.1.8 33056 2cqeA 98 5.21e+01 g.66.1.1,g.66.1.1 130720,130721 1dpgA 485 5.27e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1p42A 270 5.33e+01 d.14.1.7,d.14.1.7 87754,87755 1wa3A 205 5.34e+01 c.1.10.1 120802 1hyhA 309 5.39e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1pyaB 228 5.43e+01 1pyaB 1zs9A 261 5.59e+01 c.108.1.22 125600 2dtcA 126 5.61e+01 2bo9B 222 5.67e+01 d.17.1.5,d.17.1.5 128898,128899 2pbrA 195 5.68e+01 1unqA 125 5.70e+01 b.55.1.1 107968 1hx2A 60 5.75e+01 1hx2A g.22.1.2 44898 2aaxA 275 5.99e+01 2po4A 1104 6.02e+01 2c82A 413 6.05e+01 1fjgJ 105 6.11e+01 1fjfJ d.58.15.1 39330 1tr8A 102 6.20e+01 2v79A 135 6.25e+01 1nxcA 478 6.33e+01 a.102.2.1 92293 1jmtA 104 6.39e+01 d.58.7.3 63180 1u6lA 149 6.47e+01 d.32.1.7 113067 2hiqA 113 6.63e+01 d.58.4.12 136529 2j0nA 200 6.63e+01 a.250.1.1 137899 1rz2A 254 6.66e+01 b.100.1.1 105130 1tkeA 224 6.71e+01 d.15.10.1,d.67.1.1 112470,112471 1wd6A 123 6.72e+01 d.58.4.12 114525 1u00A 227 6.79e+01 a.8.4.1,b.130.1.1 112900,112901 1uu1A 335 6.95e+01 c.67.1.1 99993 2ie4A 589 7.03e+01 a.118.1.2 137291 2av4A 162 7.06e+01 1cr1A 296 7.13e+01 1cr1A c.37.1.11 32286 2g6yA 217 7.34e+01 2vjeA 64 7.38e+01 1uhvA 500 7.41e+01 b.71.1.2,c.1.8.3 99402,99403 1a22A 180 7.43e+01 1huw a.26.1.1 16833 1hgxA 183 7.44e+01 1tc1A c.61.1.1 34027 1t1jA 125 7.45e+01 c.23.14.2 106249 1sumB 235 7.46e+01 a.7.12.1 106025 1tqhA 247 7.51e+01 c.69.1.29 107225 1gu2A 124 7.52e+01 a.3.1.1 76348 1m2kA 249 7.55e+01 c.31.1.5 84754 1u5fA 148 7.56e+01 b.55.1.1 119542 1wwpA 119 7.61e+01 1gm5A 780 7.70e+01 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1avbA 226 7.76e+01 1led b.29.1.1 24158 1jayA 212 7.76e+01 c.2.1.6 66478 1l8dA 112 7.79e+01 h.4.12.1 73687 2d1hA 109 7.82e+01 a.4.5.50 131125 3caxA 369 7.91e+01 2or0A 414 7.97e+01