# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 1.43e-12 1u55A 188 1.60e+00 d.278.1.1 107677 2rb9A 334 1.67e+00 2z1eA 342 2.50e+00 2cz8A 69 2.53e+00 1o6gA 710 2.61e+00 b.69.7.1,c.69.1.4 81087,81088 2ux9A 69 2.67e+00 1zg2A 107 3.02e+00 1r7lA 110 3.34e+00 d.277.1.1 104837 2dumA 170 3.52e+00 1n3yA 198 3.70e+00 c.62.1.1 79976 2obdA 476 3.92e+00 2qx2A 344 4.77e+00 1skoB 130 4.99e+00 d.110.7.1 105677 2gpyA 233 5.27e+00 2z1uA 343 5.69e+00 2fjlA 150 5.88e+00 b.55.1.1 133611 1a6zA 275 6.61e+00 1agdA b.1.1.2,d.19.1.1 20781,38280 3bevA 274 6.65e+00 2vfxA 206 6.89e+00 1go4A 205 7.11e+00 d.135.1.1 70292 2ah6A 208 7.51e+00 1p5dX 463 7.62e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1fnoA 417 7.99e+00 d.58.19.1,c.56.5.4 70145,75841 1k2yX 463 8.06e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 2yweA 600 8.85e+00 1b24A 188 8.86e+00 1b24A d.95.2.1,d.95.2.1 40573,40574 2fipA 115 8.88e+00 2yxyA 115 9.12e+00 2jh1A 246 9.53e+00 1vgjA 184 1.06e+01 1vetB 125 1.06e+01 d.110.7.1 108554 1pjqA 457 1.14e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2jamA 304 1.21e+01 2b25A 336 1.24e+01 c.66.1.13 127699 2cstA 411 1.29e+01 1ajsA c.67.1.1 34273 2gcoA 201 1.30e+01 2bjdA 101 1.38e+01 1wsrA 375 1.49e+01 1r9wA 145 1.54e+01 d.89.1.2 97264 1tx4B 178 1.59e+01 1ctqA c.37.1.8 32045 2pptA 155 1.62e+01 3b4tA 262 1.62e+01 1jjeA 222 1.62e+01 1a7tA d.157.1.1 63117 1earA 147 1.63e+01 b.107.1.1,d.58.38.1 64875,64876 2ikkA 173 1.63e+01 3b8mA 280 1.65e+01 2qikA 285 1.70e+01 1zo2A 129 1.73e+01 1wr2A 238 1.75e+01 1ko3A 230 1.83e+01 d.157.1.1 90974 1t7vA 278 1.85e+01 b.1.1.2,d.19.1.1 112302,112303 2pvpA 367 1.86e+01 1kmqA 184 1.94e+01 c.37.1.8 84412 1p3dA 475 2.07e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1whnA 128 2.21e+01 d.50.1.1 114648 1ww7A 160 2.21e+01 1vixA 420 2.27e+01 c.56.5.4,d.58.19.1 100777,100778 2o5aA 125 2.31e+01 1kjvA 284 2.32e+01 b.1.1.2,d.19.1.1 77421,77422 1jjtA 228 2.34e+01 1a7tA d.157.1.1 63139 2abyA 146 2.34e+01 2cy7A 396 2.35e+01 2asfA 137 2.35e+01 b.45.1.1 127253 2rn2 155 2.48e+01 2rn2 2if1A 126 2.48e+01 d.64.1.1 39547 1u58A 253 2.57e+01 2z5bA 151 2.60e+01 1w2iA 91 2.66e+01 d.58.10.1 109127 1t4yA 105 2.67e+01 c.47.1.15 112248 2uvjA 408 2.68e+01 1pvgA 418 2.69e+01 d.14.1.3,d.122.1.2 95161,95162 1qzrA 418 2.70e+01 d.14.1.3,d.122.1.2 96659,96660 1gydB 315 2.72e+01 b.67.2.1 70751 1r5jA 337 2.74e+01 c.77.1.5 97097 2ek0A 90 2.74e+01 1rlhA 173 2.76e+01 d.256.1.1 97646 1phkA 298 2.77e+01 d.144.1.7 41635 2iykA 162 2.78e+01 2bvpA 276 2.80e+01 b.1.1.2,d.19.1.1 129291,129292 2ftrA 108 2.80e+01 d.58.4.15 134077 1gyhA 318 2.84e+01 b.67.2.1 70757 1a1oA 276 2.85e+01 1agdA b.1.1.2,d.19.1.1 20751,38265 2cdnA 201 2.86e+01 c.37.1.1 130289 2jyaA 106 3.01e+01 2hyxA 352 3.07e+01 1aisA 182 3.12e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2olnA 397 3.16e+01 1k5nA 276 3.19e+01 b.1.1.2,d.19.1.1 77266,77267 2jigA 224 3.20e+01 1a1nA 276 3.23e+01 1agdA b.1.1.2,d.19.1.1 20755,38267 3blcA 330 3.24e+01 2sak 121 3.26e+01 2sak 2sakA 121 3.26e+01 d.15.5.1 37711 1y23A 145 3.32e+01 d.13.1.1 116394 2g0qA 173 3.38e+01 1dq3A 454 3.47e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2atzA 180 3.48e+01 d.264.1.3 127317 1h2wA 710 3.51e+01 b.69.7.1,c.69.1.4 76596,76597 1vdwA 254 3.52e+01 e.7.1.1 100569 1hyhA 309 3.53e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1bywA 110 3.55e+01 1bywA d.110.3.6 40912 2adbA 148 3.61e+01 d.58.7.1 126581 1vq2A 193 3.78e+01 c.97.1.2 114004 1ezwA 349 3.78e+01 1ezwA c.1.16.3 29558 2uubJ 105 3.79e+01 d.58.15.1 139941 3bwaA 276 3.80e+01 1xh3A 276 3.82e+01 b.1.1.2,d.19.1.1 115287,115288 1jkeA 145 3.83e+01 c.110.1.1 66791 3bs6A 280 3.85e+01 1ijbA 202 3.93e+01 c.62.1.1 71229 1uouA 474 4.00e+01 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2zfzA 79 4.00e+01 2g2nA 114 4.01e+01 2iruA 303 4.05e+01 1h6vA 499 4.13e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 1u5rA 348 4.14e+01 d.144.1.7 113050 1e25A 282 4.25e+01 1e25A e.3.1.1 42731 2dgbA 84 4.27e+01 1f08A 148 4.35e+01 1f08A d.89.1.2 59564 2fb6A 117 4.36e+01 2pspA 106 4.41e+01 2pspA g.16.1.1,g.16.1.1 44730,44731 2j0fA 482 4.41e+01 2yr5A 721 4.46e+01 2dy0A 190 4.47e+01 1nrkA 328 4.47e+01 b.44.2.1,d.250.1.1 92089,92090 2rgyA 290 4.62e+01 1thfD 253 4.63e+01 1thfD c.1.2.1 28535 1j0dA 341 4.65e+01 c.79.1.1 83902 1cg2A 393 4.69e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1icxA 155 4.74e+01 d.129.3.1 71191 1fnsA 196 4.74e+01 1auq c.62.1.1 34136 2gagA 965 4.77e+01 3pcgM 238 4.87e+01 3pchM b.3.6.1 22742 2dtcA 126 4.88e+01 2hz5A 106 4.94e+01 2vjeA 64 5.02e+01 2nvnA 122 5.09e+01 d.18.1.3 138633 1ay7B 89 5.09e+01 1ay7B c.9.1.1 30836 1y7rA 133 5.10e+01 d.108.1.1 122716 1qgvA 142 5.14e+01 1qgvA c.47.1.8 33056 1z57A 339 5.23e+01 1qfmA 710 5.25e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 2g7zA 282 5.41e+01 1y4oA 104 5.69e+01 1f2dA 341 5.69e+01 1f2dA c.79.1.1 35298 2r2zA 93 5.71e+01 2g6yA 217 5.77e+01 2hbjA 410 5.82e+01 a.60.8.4,c.55.3.5 136311,136312 2op5A 117 5.85e+01 1ss9A 311 5.90e+01 c.68.1.4 105978 1pqnA 127 6.01e+01 c.47.1.8 95025 1we0A 187 6.07e+01 c.47.1.10 120930 1drw 273 6.20e+01 1drw 1drwA 273 6.20e+01 c.2.1.3,d.81.1.3 30057,39972 2b5eA 504 6.25e+01 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1iooA 196 6.27e+01 d.124.1.1 71250 1jl2A 156 6.30e+01 c.55.3.1 66822 2i39A 137 6.32e+01 2og4A 254 6.42e+01 1i2aA 219 6.49e+01 e.24.1.1 90660 2dbbA 151 6.51e+01 1n35A 1267 6.51e+01 e.8.1.4 79935 1sf9A 128 6.55e+01 b.34.15.1 98831 1zq1C 633 6.56e+01 a.182.1.2,d.74.4.1,d.128.1.5 125493,125494,125495 1b3tA 147 6.60e+01 1b3tA d.58.8.1 39228 1tz0A 114 6.79e+01 d.58.4.5 107463 1eaf 243 6.81e+01 1eaf 3bueA 79 6.89e+01 1yycA 174 6.90e+01 2z0dA 357 7.02e+01 1f45B 197 7.04e+01 1f45B a.26.1.1 59642 1lqtA 456 7.23e+01 c.3.1.1,c.4.1.1 74198,74199 1u2zA 433 7.30e+01 c.66.1.31 107626 2oap1 511 7.31e+01 2uuuA 584 7.39e+01 2ffsA 157 7.45e+01 d.129.3.7 133391 1avwB 171 7.45e+01 1wba b.42.4.1 25599 1bcpA 235 7.50e+01 1bcpA d.166.1.1 42255 2vg0A 227 7.58e+01 1y0bA 197 7.65e+01 c.61.1.1 122476 2a10A 125 7.68e+01 d.58.56.1 125965 2v5iA 559 7.85e+01 1tw0A 157 7.89e+01 d.129.3.1 119364