# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 3.02e-14 2cz8A 69 6.90e-01 1u55A 188 9.45e-01 d.278.1.1 107677 2obdA 476 1.84e+00 1skoB 130 2.49e+00 d.110.7.1 105677 2gcoA 201 2.62e+00 1kmqA 184 3.05e+00 c.37.1.8 84412 1klqA 197 4.09e+00 d.135.1.1 68689 1tx4B 178 4.28e+00 1ctqA c.37.1.8 32045 2qx2A 344 5.40e+00 2oap1 511 5.86e+00 1vetB 125 6.66e+00 d.110.7.1 108554 1zg2A 107 7.01e+00 2gpyA 233 8.01e+00 1in0A 163 8.27e+00 d.58.49.1 83694 d.58.49.1 83695 2z0dA 357 8.74e+00 1kjvA 284 9.05e+00 b.1.1.2 77421 d.19.1.1 77422 2fb6A 117 9.39e+00 1h2wA 710 9.75e+00 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 1.03e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1e8nA 710 1.04e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1h2xA 710 1.04e+01 b.69.7.1 76598 c.69.1.4 76599 2yxyA 115 1.10e+01 1o6gA 710 1.13e+01 b.69.7.1 81087 c.69.1.4 81088 1crwG 333 1.23e+01 1dssG c.2.1.3 30026 d.81.1.1 39941 1dssG 333 1.24e+01 1dssG c.2.1.3 30022 d.81.1.1 39937 1kf6A 602 1.26e+01 a.7.3.1 72394 c.3.1.4 72395 d.168.1.1 72396 2j0vA 212 1.31e+01 2cy7A 396 1.31e+01 1t7vA 278 1.32e+01 b.1.1.2 112302 d.19.1.1 112303 2bjdA 101 1.37e+01 2cstA 411 1.53e+01 1ajsA c.67.1.1 34273 2jyaA 106 1.54e+01 1k2yX 463 1.55e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1k5nA 276 1.58e+01 b.1.1.2 77266 d.19.1.1 77267 1p5dX 463 1.61e+01 c.84.1.1 94138 c.84.1.1 94139 c.84.1.1 94140 d.129.2.1 94141 1a6zA 275 1.61e+01 1agdA b.1.1.2 20781 d.19.1.1 38280 2vfxA 206 1.64e+01 1dujA 187 1.65e+01 1dujA d.135.1.1 41449 1gydB 315 1.66e+01 b.67.2.1 70751 2jamA 304 1.68e+01 1qzrA 418 1.68e+01 d.14.1.3 96659 d.122.1.2 96660 3bwdD 182 1.88e+01 1pvgA 418 1.88e+01 d.14.1.3 95161 d.122.1.2 95162 2b25A 336 1.89e+01 c.66.1.13 127699 1f45B 197 1.93e+01 1f45B a.26.1.1 59642 1h6vA 499 2.04e+01 3grs c.3.1.5 60693 c.3.1.5 60694 d.87.1.1 60695 1gyhA 318 2.05e+01 b.67.2.1 70757 1rm4A 337 2.13e+01 c.2.1.3 105000 d.81.1.1 105001 1fnoA 417 2.16e+01 c.56.5.4 75841 d.58.19.1 70145 1u8fO 335 2.17e+01 c.2.1.3 119626 d.81.1.1 119627 2dkhA 639 2.26e+01 2ek0A 90 2.30e+01 1azvA 153 2.32e+01 1mfmA b.1.8.1 22247 1r9wA 145 2.51e+01 d.89.1.2 97264 1go4A 205 2.67e+01 d.135.1.1 70292 2g7zA 282 2.70e+01 3pcgM 238 2.79e+01 3pchM b.3.6.1 22742 2fjlA 150 2.86e+01 b.55.1.1 133611 1ci0A 228 2.90e+01 1ci0A b.45.1.1 25750 1n3yA 198 3.14e+01 c.62.1.1 79976 2asfA 137 3.14e+01 b.45.1.1 127253 1mfmA 153 3.21e+01 1mfmA b.1.8.1 22246 1fy7A 278 3.36e+01 1fy7A d.108.1.1 40817 2cdnA 201 3.42e+01 c.37.1.1 130289 2sak 121 3.46e+01 2sak 2sakA 121 3.46e+01 d.15.5.1 37711 1zq1C 633 3.58e+01 a.182.1.2 125493 d.74.4.1 125494 d.128.1.5 125495 1agdA 276 3.62e+01 1agdA b.1.1.2 20741 d.19.1.1 38260 2ptfA 233 3.68e+01 1ytbA 180 3.74e+01 1ytbA d.129.1.1 41276 d.129.1.1 41277 1lxdA 100 3.79e+01 1lfdA d.15.1.5 37624 1a0p 290 3.82e+01 1a0p 1a0pA 290 3.82e+01 a.60.9.1 18105 d.163.1.1 42165 3bevA 274 3.87e+01 2bvpA 276 3.90e+01 b.1.1.2 129291 d.19.1.1 129292