# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2jz5A 91 3.48e-15 1u55A 188 3.28e-01 d.278.1.1 107677 1skoB 130 5.55e-01 d.110.7.1 105677 2cz8A 69 6.90e-01 1vetB 125 9.96e-01 d.110.7.1 108554 2obdA 476 1.62e+00 2cy7A 396 2.05e+00 1klqA 197 2.11e+00 d.135.1.1 68689 2gcoA 201 2.30e+00 1kmqA 184 2.42e+00 c.37.1.8 84412 2qx2A 344 2.84e+00 1tx4B 178 3.18e+00 1ctqA c.37.1.8 32045 2vfxA 206 3.26e+00 1a6zA 275 3.99e+00 1agdA b.1.1.2 20781 d.19.1.1 38280 2bjdA 101 4.10e+00 1go4A 205 4.74e+00 d.135.1.1 70292 1wr2A 238 5.52e+00 1y7rA 133 5.74e+00 d.108.1.1 122716 3bevA 274 5.77e+00 1p5dX 463 6.00e+00 c.84.1.1 94138 c.84.1.1 94139 c.84.1.1 94140 d.129.2.1 94141 2yxyA 115 6.06e+00 1in0A 163 6.19e+00 d.58.49.1 83694 d.58.49.1 83695 2yweA 600 6.24e+00 1k2yX 463 6.41e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 2z0dA 357 6.62e+00 1gydB 315 6.64e+00 b.67.2.1 70751 1gyhA 318 6.67e+00 b.67.2.1 70757 3b4tA 262 6.87e+00 2gpyA 233 7.23e+00 1n3yA 198 7.53e+00 c.62.1.1 79976 1o6gA 710 7.77e+00 b.69.7.1 81087 c.69.1.4 81088 1zg2A 107 8.19e+00 2rb9A 334 8.25e+00 1zq1C 633 8.25e+00 a.182.1.2 125493 d.74.4.1 125494 d.128.1.5 125495 1dujA 187 8.25e+00 1dujA d.135.1.1 41449 2fb6A 117 8.46e+00 1e8nA 710 9.28e+00 1qfmA b.69.7.1 27675 c.69.1.4 34643 1kjvA 284 9.85e+00 b.1.1.2 77421 d.19.1.1 77422 2jyaA 106 1.04e+01 2cstA 411 1.08e+01 1ajsA c.67.1.1 34273 2j0vA 212 1.09e+01 2dy0A 190 1.15e+01 2g0qA 173 1.22e+01 1fnoA 417 1.25e+01 c.56.5.4 75841 d.58.19.1 70145 1agdA 276 1.27e+01 1agdA b.1.1.2 20741 d.19.1.1 38260 2fjlA 150 1.35e+01 b.55.1.1 133611 2cdnA 201 1.47e+01 c.37.1.1 130289 2b5eA 504 1.51e+01 c.47.1.2 127888 c.47.1.2 127889 c.47.1.2 127890 c.47.1.2 127891 2fipA 115 1.53e+01 1pvgA 418 1.53e+01 d.14.1.3 95161 d.122.1.2 95162 1dq3A 454 1.58e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1b24A 188 1.63e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1qzrA 418 1.66e+01 d.14.1.3 96659 d.122.1.2 96660 3b8mA 280 1.76e+01 2burB 241 1.78e+01 b.3.6.1 129228 2ftrA 108 1.79e+01 d.58.4.15 134077 2fltA 149 1.89e+01 1y0bA 197 1.95e+01 c.61.1.1 122476 1zb9A 143 2.10e+01 2dtcA 126 2.18e+01 1gqeA 365 2.21e+01 e.38.1.1 70351 1drw 273 2.21e+01 1drw 1drwA 273 2.21e+01 c.2.1.3 30057 d.81.1.3 39972 1pcaA 95 2.25e+01 d.58.3.1 39063 2qikA 285 2.27e+01 1f45B 197 2.29e+01 1f45B a.26.1.1 59642 3bwdD 182 2.31e+01 2v5iA 559 2.41e+01 2buwB 241 2.46e+01 1w4vA 119 2.49e+01 3pcgM 238 2.53e+01 3pchM b.3.6.1 22742 1jjhA 86 2.66e+01 2bopA d.58.8.1 63119 1omp 370 2.70e+01 4mbp 1vq2A 193 2.79e+01 c.97.1.2 114004 2dtjA 178 2.81e+01 1a1oA 276 2.82e+01 1agdA b.1.1.2 20751 d.19.1.1 38265 1t7vA 278 2.93e+01 b.1.1.2 112302 d.19.1.1 112303 1tr0A 108 2.95e+01 d.58.4.4 107261 2z1uA 343 3.01e+01 1r6lA 239 3.02e+01 d.14.1.4 97153 d.101.1.1 97154 2i39A 137 3.03e+01 1h6vA 499 3.04e+01 3grs c.3.1.5 60693 c.3.1.5 60694 d.87.1.1 60695 1pjqA 457 3.09e+01 c.2.1.11 94766 c.90.1.1 94767 e.37.1.1 94768 2hbjA 410 3.21e+01 a.60.8.4 136311 c.55.3.5 136312 2z1eA 342 3.23e+01 1k5nA 276 3.31e+01 b.1.1.2 77266 d.19.1.1 77267 1zpwX 90 3.32e+01 d.58.58.1 125478 1b3tA 147 3.33e+01 1b3tA d.58.8.1 39228 2av1A 275 3.40e+01 b.1.1.2 127349 d.19.1.1 127350 1a1nA 276 3.40e+01 1agdA b.1.1.2 20755 d.19.1.1 38267 2aehA 369 3.46e+01 a.11.2.1 126625 b.55.1.5 126626 d.15.1.4 126627 1bvyF 191 3.47e+01 1bvyF c.23.5.1 31207 1wdkC 390 3.51e+01 c.95.1.1 109258 c.95.1.1 109259 1p1lA 102 3.54e+01 d.58.5.2 87695 1mp8A 281 3.59e+01 d.144.1.7 91384 1vixA 420 3.59e+01 c.56.5.4 100777 d.58.19.1 100778 1r9wA 145 3.61e+01 d.89.1.2 97264 1laxA 370 3.63e+01 c.94.1.1 84576 2g7zA 282 3.68e+01 2hyxA 352 3.72e+01 2g2kA 170 3.72e+01 2bvpA 276 3.74e+01 b.1.1.2 129291 d.19.1.1 129292 2al6A 375 3.79e+01 a.11.2.1 126966 b.55.1.5 126967 d.15.1.4 126968 1wteA 272 3.82e+01 c.52.1.29 114876 2yvsA 219 3.85e+01 1avwB 171 3.87e+01 1wba b.42.4.1 25599 2jh1A 246 3.98e+01