# List of top-scoring protein chains for T0437.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2jz5A 91 4.48e-09 1fi8A 228 4.070 b.47.1.2 26374 2fioA 123 43.27 2fipA 115 43.74 1suiA 247 46.46 c.66.1.1 119049 1nwvA 129 53.67 g.18.1.1,g.18.1.1 86304,86305 2cz8A 69 63.33 2v18A 68 65.91 1nxcA 478 67.59 a.102.2.1 92293 2ux9A 69 68.03 2v19A 68 68.30 1nwaA 203 78.81 d.58.28.1 86295 1t94A 459 82.68 d.240.1.1,e.8.1.7 106701,106702 2oh2A 508 85.83