# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	1.86e-09		
2cc6A	68	10.32	d.230.2.1	130218
2ehbD	143	18.34		
1uliB	187	18.97	d.17.4.4	107923
1xo8A	151	19.84	b.1.25.1	115698
2cz8A	69	21.36		
1zpvA	91	25.67	d.58.18.7	125475
1a7lA	389	31.31	c.94.1.1	35787
1skoB	130	31.98	d.110.7.1	105677
1j27A	102	34.05	d.58.50.1	90778
1mogA	67	35.47	d.230.2.1	85034
1u55A	188	40.36	d.278.1.1	107677
1anf	370	40.98		
2ew0A	192	41.36	d.310.1.1	132445
1v4pA	157	41.52	d.67.1.2	113533
2zfdB	123	44.34		
2o09A	189	45.01		
2agkA	260	52.67		
1vetB	125	55.15	d.110.7.1	108554
2cjaA	522	59.49		
2ifsA	169	64.23		
1laxA	370	64.72	c.94.1.1	84576
1k2yX	463	64.94	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1a9eA	277	64.99	b.1.1.2,d.19.1.1	20757,38268
1f08A	148	72.03	d.89.1.2	59564
2q5wD	77	72.30		
1y4oA	104	76.73		
1v7oA	165	80.73	d.67.1.2	100480
2b95A	106	81.58		
2e6rA	92	82.33		
3bkpA	232	82.88		
1vhsA	175	83.00	d.108.1.1	100698