# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	2.30e-13		
2cc6A	68	5.669	d.230.2.1	130218
1mogA	67	9.161	d.230.2.1	85034
1zpvA	91	10.07	d.58.18.7	125475
1j27A	102	10.34	d.58.50.1	90778
1xo8A	151	11.70	b.1.25.1	115698
1qysA	106	13.52	k.41.1.1	96603
2q5wD	77	19.26		
2ehbD	143	21.11		
1u55A	188	23.33	d.278.1.1	107677
1wbaA	175	25.11	b.42.4.1	25591
1k2yX	463	28.31	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
2cz8A	69	29.30		
2o09A	189	31.42		
2zfdB	123	31.87		
1r7lA	110	32.81	d.277.1.1	104837
1v4pA	157	32.99	d.67.1.2	113533
1ru0A	105	34.15	d.74.1.1	111937
2gdnA	267	37.09		
2jqoA	108	41.03		
2ifsA	169	44.49		
1vhsA	175	49.56	d.108.1.1	100698
1l0oA	150	50.81	d.122.1.3	73403
1y4oA	104	51.91		
2b95A	106	54.07		
2fvyA	309	56.28	c.93.1.1	134227
2c9wA	169	56.64		
1fm0D	81	56.80	d.15.3.1	37642
2agkA	260	62.96		
1div	149	67.02		
1b4bA	71	67.13	d.74.2.1	39718
1eaf	243	67.29		
1b8eA	162	68.12	b.60.1.1	59077
1x1fA	149	68.62	b.55.1.1	121579
2ohwA	133	71.70		
1evhA	112	73.56	b.55.1.4	26997
1v1aA	309	75.94	c.72.1.1	100249
3bkpA	232	77.06		
1s62A	106	79.04	d.212.1.1	118874
1ccvA	56	80.90	g.22.1.1	44897
1xkpC	143	81.30	d.198.1.1	122088
1avwB	171	82.12	b.42.4.1	25599
1a7lA	389	83.54	c.94.1.1	35787
2p5mA	83	84.48		
1n08A	163	87.13	b.43.5.1	79730
1couA	85	89.58	g.22.1.1	44896