# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	7.89e-11		
1zpvA	91	4.309	d.58.18.7	125475
1a7lA	389	6.375	c.94.1.1	35787
2ehbD	143	10.09		
2cc6A	68	12.97	d.230.2.1	130218
1anf	370	15.23		
1v4pA	157	17.46	d.67.1.2	113533
1v7oA	165	18.22	d.67.1.2	100480
1qysA	106	18.76	k.41.1.1	96603
1t6lA	290	21.28	d.131.1.2,d.131.1.2	106574,106575
1j27A	102	25.91	d.58.50.1	90778
1laxA	370	28.74	c.94.1.1	84576
1eaf	243	30.16		
1k2yX	463	34.02	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
2ew0A	192	34.30	d.310.1.1	132445
1ezoA	370	35.11	c.94.1.1	59539
2cz8A	69	36.45		
1b5sA	242	36.47	c.43.1.1	32626
2zfdB	123	38.55		
1wr2A	238	40.80		
1uliB	187	41.08	d.17.4.4	107923
2ii3A	262	42.53		
1ru0A	105	44.23	d.74.1.1	111937
1mogA	67	46.99	d.230.2.1	85034
2p35A	259	51.08		
2ifsA	169	53.63		
1skoB	130	54.84	d.110.7.1	105677
1zndA	174	55.45	b.60.1.1	125380
2vjeA	64	56.53		
1wbaA	175	57.43	b.42.4.1	25591
1dpbA	243	58.15	c.43.1.1	32618
2eenA	183	59.63		
1xo8A	151	62.29	b.1.25.1	115698
2c9wA	169	65.70		
3bkpA	232	70.24		
2fjtA	182	71.86		
1qwiA	143	79.05	d.227.1.1	96474
2hzqA	174	79.11		
1vetB	125	81.46	d.110.7.1	108554
1gh2A	107	82.01	c.47.1.1	60515
2qx2A	344	82.54		
1div	149	83.28		
1in0A	163	84.50	d.58.49.1,d.58.49.1	83694,83695