# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	5.58e-11		
1zpvA	91	6.546	d.58.18.7	125475
1a7lA	389	8.148	c.94.1.1	35787
2ehbD	143	9.848		
2cc6A	68	11.65	d.230.2.1	130218
1j27A	102	16.81	d.58.50.1	90778
2zfdB	123	20.35		
1anf	370	22.14		
2ew0A	192	24.98	d.310.1.1	132445
1t6lA	290	29.02	d.131.1.2,d.131.1.2	106574,106575
1qysA	106	31.40	k.41.1.1	96603
1uliB	187	31.50	d.17.4.4	107923
1v4pA	157	33.96	d.67.1.2	113533
1eaf	243	34.12		
2cz8A	69	36.07		
1laxA	370	36.62	c.94.1.1	84576
1k2yX	463	40.47	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
1ezoA	370	40.73	c.94.1.1	59539
1mogA	67	41.66	d.230.2.1	85034
1wr2A	238	41.79		
1ru0A	105	50.07	d.74.1.1	111937
1v7oA	165	50.63	d.67.1.2	100480
1b5sA	242	52.11	c.43.1.1	32626
2p35A	259	53.80		
2ii3A	262	54.70		
1xo8A	151	55.49	b.1.25.1	115698
1skoB	130	62.07	d.110.7.1	105677
2e6rA	92	65.05		
1gh2A	107	67.55	c.47.1.1	60515
2o09A	189	70.46		
1qwiA	143	76.78	d.227.1.1	96474
1in0A	163	79.06	d.58.49.1,d.58.49.1	83694,83695
2vjeA	64	81.32		
1dpbA	243	83.37	c.43.1.1	32618
1ukkA	142	87.16	d.227.1.1	99491
1wbaA	175	87.41	b.42.4.1	25591
2qx2A	344	89.11		
1qq4A	198	89.66	b.47.1.1	25768
3bkpA	232	89.80