# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2jz5A	91	9.96e-14		
1j27A	102	9.865	d.58.50.1	90778
2cw9A	194	9.97	d.17.4.13	130920
1kidA	203	10.27	c.8.5.1	30771
2qx2A	344	12.60		
3bnwA	181	16.38		
1kid	203	18.50		
1n08A	163	19.97	b.43.5.1	79730
2eenA	183	22.14		
2cc6A	68	22.79	d.230.2.1	130218
2ifsA	169	22.80		
1uliB	187	24.65	d.17.4.4	107923
1rz2A	254	29.27	b.100.1.1	105130
1bvoA	175	29.38	b.2.5.3	22457
2v8hA	474	30.71		
1a7lA	389	33.61	c.94.1.1	35787
1k2yX	463	34.28	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	68063,68064,68065,68066
2ehbD	143	34.91		
1dxeA	256	38.75	c.1.12.5	29310
2vjeA	64	39.62		
2nlyA	245	42.18	c.6.2.7	138364
1qysA	106	43.44	k.41.1.1	96603
2oocA	113	46.04		
3b48A	135	48.95		
1b97A	244	49.33	c.52.1.2	33252
1sf9A	128	49.52	b.34.15.1	98831
1ru0A	105	51.71	d.74.1.1	111937
2cjaA	522	52.50		
1b94A	244	54.14	c.52.1.2	33250
2yxyA	115	54.64		
2geyA	158	58.49		
3bxoA	239	58.74		
2ebbA	101	60.16		
1wr2A	238	60.78		
2idoB	83	61.22	a.237.1.1	137285
2cz8A	69	61.25		
2qebA	145	63.47		
2id1A	130	63.77		
2fipA	115	65.49		
1nb9A	147	66.16	b.43.5.1	85515
1flp	142	66.71		
2a4xA	138	67.08	d.32.1.2	126166
2f7lA	455	69.77		
1ezoA	370	70.00	c.94.1.1	59539
1b96A	244	70.14	c.52.1.2	33268
1fnoA	417	71.95	d.58.19.1,c.56.5.4	70145,75841
1ri7A	171	72.08	a.4.5.32,d.58.4.2	97504,97505
1gh2A	107	72.40	c.47.1.1	60515
1hynP	379	72.64	d.112.1.2	61408
1nqkA	381	75.70	c.1.16.4	92050
1t6lA	290	78.21	d.131.1.2,d.131.1.2	106574,106575
1y7rA	133	78.70	d.108.1.1	122716
2o5aA	125	79.54		
1lxkA	721	79.64	a.102.3.2,b.24.1.1,b.30.5.2	74331,74332,74333
1erw	105	80.07		
1zroA	602	83.97	a.264.1.1,a.264.1.1	125551,125552
1eonA	245	84.14	c.52.1.2	33238
2a7mA	250	84.16		
1x4tA	92	84.80	a.2.15.1	121698